Variant report

Variant	rs548873827
Chromosome Location	chr2:172587124-172587125
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr2:172585756..172589058-chr2:172589522..172592081,3	MCF-7	breast:
2	chr2:172578420..172580000-chr2:172586848..172589301,2	MCF-7	breast:
3	chr2:172585739..172588158-chr2:172595691..172597501,2	K562	blood:

Extended variants
information (count: 2 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv834457	chr2:172564939-172770901	Strong transcription Genic enhancers Enhancers Weak transcription Active TSS Flanking Active TSS Bivalent/Poised TSS ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	14 gene(s)	inside rSNPs	diseases
2	nsv522519	chr2:172586567-172600310	Strong transcription Weak transcription Genic enhancers Enhancers ZNF genes & repeats	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:125 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:172545200-172611200	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
2	chr2:172545400-172588000	Weak transcription	H9 Cell Line	embryonic stem cell
3	chr2:172545800-172588000	Weak transcription	Right Ventricle	heart
4	chr2:172546600-172602800	Weak transcription	Small Intestine	intestine
5	chr2:172552200-172587600	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
6	chr2:172554400-172588000	Weak transcription	Esophagus	oesophagus
7	chr2:172559600-172605200	Weak transcription	Colonic Mucosa	Colon
8	chr2:172561200-172587800	Weak transcription	Rectal Smooth Muscle	rectum
9	chr2:172561400-172601800	Weak transcription	Fetal Heart	heart
10	chr2:172564200-172610000	Strong transcription	Primary monocytes fromperipheralblood	blood
11	chr2:172569000-172618600	Weak transcription	ES-I3 Cell Line	embryonic stem cell
12	chr2:172569800-172611400	Strong transcription	Monocytes-CD14+_RO01746	blood
13	chr2:172571400-172597800	Strong transcription	HSMM	muscle
14	chr2:172571800-172594200	Strong transcription	HUVEC	blood vessel
15	chr2:172572000-172595400	Strong transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
16	chr2:172574800-172587800	Weak transcription	Lung	lung
17	chr2:172575400-172595600	Strong transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
18	chr2:172579800-172589200	Strong transcription	Primary T helper cells fromperipheralblood	blood
19	chr2:172579800-172595600	Strong transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
20	chr2:172579800-172611200	Strong transcription	Adipose Nuclei	Adipose
21	chr2:172580000-172598000	Strong transcription	Rectal Mucosa Donor 31	rectum
22	chr2:172580200-172588200	Strong transcription	Muscle Satellite Cultured Cells	--
23	chr2:172580200-172589600	Strong transcription	Primary T regulatory cells fromperipheralblood	blood
24	chr2:172580200-172590000	Strong transcription	Breast Myoepithelial Primary Cells	Breast
25	chr2:172580200-172595400	Strong transcription	Duodenum Mucosa	Duodenum
26	chr2:172580200-172595400	Strong transcription	Rectal Mucosa Donor 29	rectum
27	chr2:172580200-172595600	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
28	chr2:172580200-172596000	Strong transcription	Primary hematopoietic stem cells	blood
29	chr2:172580200-172611200	Strong transcription	Placenta	Placenta
30	chr2:172580400-172589600	Strong transcription	Primary T cells fromperipheralblood	blood
31	chr2:172580400-172595400	Strong transcription	Primary Natural Killer cells fromperipheralblood	blood
32	chr2:172580400-172595600	Strong transcription	Primary T cells from cord blood	blood
33	chr2:172580400-172610600	Strong transcription	Fetal Thymus	thymus
34	chr2:172580400-172611400	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
35	chr2:172580400-172611400	Strong transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
36	chr2:172580600-172595400	Strong transcription	Primary B cells from cord blood	blood
37	chr2:172580800-172587800	Strong transcription	Primary T killer memory cells from peripheral blood	blood
38	chr2:172580800-172595600	Strong transcription	Primary neutrophils fromperipheralblood	blood
39	chr2:172581000-172595000	Weak transcription	iPS-15b Cell Line	embryonic stem cell
40	chr2:172581000-172595400	Strong transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
41	chr2:172581200-172587600	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
42	chr2:172581200-172587600	Weak transcription	Fetal Stomach	stomach
43	chr2:172581200-172587800	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
44	chr2:172581200-172587800	Weak transcription	Gastric	stomach
45	chr2:172581200-172587800	Weak transcription	Spleen	Spleen
46	chr2:172581200-172588000	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
47	chr2:172581200-172588000	Weak transcription	Aorta	Aorta
48	chr2:172581200-172588000	Weak transcription	Fetal Intestine Small	intestine
49	chr2:172581200-172588000	Weak transcription	Pancreas	Pancrea
50	chr2:172581200-172589800	Strong transcription	Primary T helper cells PMA-I stimulated	--

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