Variant report

Variant	rs548912766
Chromosome Location	chr3:69172125-69172126
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 3 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv876933	chr3:69059023-69227379	Enhancers Strong transcription Weak transcription Active TSS Bivalent Enhancer Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	15 gene(s)	inside rSNPs	diseases
2	esv2762334	chr3:69157085-69173375	Weak transcription Flanking Active TSS Genic enhancers Enhancers Strong transcription Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
3	nsv521439	chr3:69171803-69185740	Enhancers Flanking Active TSS Weak transcription Bivalent Enhancer Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:15 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:69160600-69172200	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
2	chr3:69169800-69172200	Active TSS	Left Ventricle	heart
3	chr3:69169800-69172200	Active TSS	Psoas Muscle	Psoas
4	chr3:69170800-69172200	Enhancers	Duodenum Smooth Muscle	Duodenum
5	chr3:69171200-69172200	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
6	chr3:69171200-69172200	Enhancers	Brain Substantia Nigra	brain
7	chr3:69171400-69172400	Enhancers	Hela-S3	cervix
8	chr3:69171600-69172600	Enhancers	HSMM	muscle
9	chr3:69171600-69173000	Enhancers	Fetal Heart	heart
10	chr3:69171800-69172200	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
11	chr3:69171800-69172200	Flanking Active TSS	HSMMtube	muscle
12	chr3:69171800-69172400	Enhancers	Fetal Muscle Leg	muscle
13	chr3:69172000-69172200	Flanking Active TSS	Skeletal Muscle Male	skeletal muscle
14	chr3:69172000-69172200	Enhancers	Stomach Smooth Muscle	stomach
15	chr3:69172000-69172600	Flanking Active TSS	Skeletal Muscle Female	skeletal muscle

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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