Variant report

Variant	rs548917826
Chromosome Location	chr13:110399379-110399380
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr13:110394415..110400324-chr13:110434969..110439511,6	K562	blood:
2	chr13:110397775..110399986-chr13:110436393..110438798,2	MCF-7	breast:
3	chr13:110394415..110400589-chr13:110436285..110439325,5	K562	blood:

Variant related genes	Relation type
ENSG00000185950	Chromatin interaction

Extended variants
information (count: 7 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:7 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1044855	chr13:110301572-110408608	Weak transcription Enhancers Flanking Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent Enhancer Active TSS Strong transcription Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	3 gene(s)	inside rSNPs	diseases
2	nsv826788	chr13:110381750-110469062	Flanking Bivalent TSS/Enh Genic enhancers Enhancers Flanking Active TSS Weak transcription Transcr. at gene 5' and 3' Strong transcription Active TSS ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	30 gene(s)	inside rSNPs	diseases
3	nsv826789	chr13:110387268-110473524	Weak transcription Genic enhancers Enhancers Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Strong transcription Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	30 gene(s)	inside rSNPs	diseases
4	nsv526943	chr13:110393477-110421884	Weak transcription Genic enhancers Enhancers Flanking Active TSS Strong transcription Active TSS ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	4 gene(s)	inside rSNPs	diseases
5	nsv826790	chr13:110395165-110463032	Weak transcription Genic enhancers Flanking Active TSS Enhancers Bivalent Enhancer Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Strong transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	30 gene(s)	inside rSNPs	diseases
6	nsv826791	chr13:110397733-110462553	Flanking Active TSS Weak transcription Enhancers Transcr. at gene 5' and 3' Genic enhancers Strong transcription Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	30 gene(s)	inside rSNPs	diseases
7	nsv826792	chr13:110398678-110462209	Active TSS Weak transcription Enhancers Strong transcription Flanking Active TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	30 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:85 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr13:110390800-110402200	Weak transcription	HSMM	muscle
2	chr13:110391200-110402600	Weak transcription	Breast Myoepithelial Primary Cells	Breast
3	chr13:110391200-110404400	Weak transcription	HSMMtube	muscle
4	chr13:110395600-110404000	Weak transcription	Liver	Liver
5	chr13:110396400-110401200	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
6	chr13:110396400-110416400	Weak transcription	H1 Cell Line	embryonic stem cell
7	chr13:110396600-110402200	Weak transcription	iPS-18 Cell Line	embryonic stem cell
8	chr13:110396600-110404000	Weak transcription	Muscle Satellite Cultured Cells	--
9	chr13:110396600-110404400	Weak transcription	Primary monocytes fromperipheralblood	blood
10	chr13:110396600-110404400	Weak transcription	Gastric	stomach
11	chr13:110396600-110407400	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
12	chr13:110396600-110407400	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
13	chr13:110396600-110411800	Weak transcription	Fetal Kidney	kidney
14	chr13:110396600-110412200	Weak transcription	iPS-15b Cell Line	embryonic stem cell
15	chr13:110396600-110412800	Weak transcription	H9 Cell Line	embryonic stem cell
16	chr13:110396600-110417000	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
17	chr13:110396800-110402800	Weak transcription	HUES64 Cell Line	embryonic stem cell
18	chr13:110396800-110403000	Weak transcription	Pancreatic Islets	Pancreatic Islet
19	chr13:110396800-110404400	Weak transcription	Primary T cells from cord blood	blood
20	chr13:110396800-110405800	Weak transcription	Primary T helper cells PMA-I stimulated	--
21	chr13:110396800-110406600	Weak transcription	Primary T helper cells fromperipheralblood	blood
22	chr13:110396800-110411200	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
23	chr13:110396800-110417000	Weak transcription	Primary T helper naive cells from peripheral blood	blood
24	chr13:110397000-110403400	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
25	chr13:110397000-110404200	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
26	chr13:110397000-110404400	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
27	chr13:110397000-110404600	Weak transcription	Brain Angular Gyrus	brain
28	chr13:110397000-110405000	Weak transcription	Duodenum Smooth Muscle	Duodenum
29	chr13:110397000-110405400	Weak transcription	Hela-S3	cervix
30	chr13:110397000-110405600	Weak transcription	HUES48 Cell Line	embryonic stem cell
31	chr13:110397000-110406200	Weak transcription	NHDF-Ad	bronchial
32	chr13:110397000-110407400	Weak transcription	iPS-20b Cell Line	embryonic stem cell
33	chr13:110397000-110407400	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
34	chr13:110397000-110407800	Weak transcription	Fetal Thymus	thymus
35	chr13:110397000-110416400	Weak transcription	ES-I3 Cell Line	embryonic stem cell
36	chr13:110397000-110428800	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
37	chr13:110397200-110402800	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
38	chr13:110397200-110404400	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
39	chr13:110397200-110404400	Weak transcription	Brain Germinal Matrix	brain
40	chr13:110397200-110406600	Weak transcription	NH-A	brain
41	chr13:110397200-110407400	Weak transcription	Brain Cingulate Gyrus	brain
42	chr13:110397200-110407800	Weak transcription	Rectal Smooth Muscle	rectum
43	chr13:110397200-110408000	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
44	chr13:110397200-110411400	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
45	chr13:110397200-110430400	Weak transcription	NHLF	lung
46	chr13:110397400-110399800	Weak transcription	A549	lung
47	chr13:110397400-110402800	Weak transcription	Primary hematopoietic stem cells short term culture	blood
48	chr13:110397400-110403200	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
49	chr13:110397400-110404200	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
50	chr13:110397400-110404200	Weak transcription	Brain Inferior Temporal Lobe	brain

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