Variant report

Variant	rs548918984
Chromosome Location	chr4:175483069-175483070
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr4:175478843..175480644-chr4:175480681..175483174,2	MCF-7	breast:

Extended variants
information (count: 12 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:12 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv869116	chr4:175231090-175801761	Flanking Active TSS Enhancers Genic enhancers Weak transcription Bivalent/Poised TSS Active TSS Strong transcription Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA	13 gene(s)	inside rSNPs	diseases
2	nsv881376	chr4:175466101-175513812	Enhancers Flanking Active TSS Weak transcription Active TSS ZNF genes & repeats	TF binding region Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
3	nsv1018390	chr4:175475505-175969742	Enhancers Weak transcription Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent/Poised TSS Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases
4	nsv880800	chr4:175476462-175513812	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
5	nsv881268	chr4:175476462-175513812	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
6	nsv881481	chr4:175476462-175515345	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
7	nsv881192	chr4:175476462-175523073	Weak transcription Enhancers Flanking Active TSS Active TSS ZNF genes & repeats	Chromatin interactive region	n/a	inside rSNPs	diseases
8	nsv880379	chr4:175479889-175513812	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats	Chromatin interactive region	n/a	inside rSNPs	diseases
9	nsv881565	chr4:175479889-175515345	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats	Chromatin interactive region	n/a	inside rSNPs	diseases
10	nsv881297	chr4:175479889-175515940	ZNF genes & repeats Enhancers Weak transcription Flanking Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
11	nsv880684	chr4:175479889-175523073	Enhancers ZNF genes & repeats Weak transcription Flanking Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
12	esv2763412	chr4:175482525-175503770	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:21 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:175466600-175484600	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
2	chr4:175479800-175484600	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
3	chr4:175480800-175483400	Enhancers	H1 Cell Line	embryonic stem cell
4	chr4:175480800-175483800	Enhancers	iPS-18 Cell Line	embryonic stem cell
5	chr4:175480800-175485000	Enhancers	iPS-15b Cell Line	embryonic stem cell
6	chr4:175480800-175485400	Enhancers	ES-I3 Cell Line	embryonic stem cell
7	chr4:175481000-175485000	Enhancers	HUES6 Cell Line	embryonic stem cell
8	chr4:175481000-175485400	Enhancers	HUES64 Cell Line	embryonic stem cell
9	chr4:175481600-175484200	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
10	chr4:175481600-175484600	Weak transcription	Stomach Mucosa	stomach
11	chr4:175482200-175483600	Enhancers	A549	lung
12	chr4:175482400-175483400	Enhancers	Pancreatic Islets	Pancreatic Islet
13	chr4:175482600-175483200	Enhancers	Primary hematopoietic stem cells short term culture	blood
14	chr4:175482600-175483200	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
15	chr4:175482600-175483200	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
16	chr4:175482800-175483200	Flanking Active TSS	HUES48 Cell Line	embryonic stem cell
17	chr4:175482800-175483200	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
18	chr4:175482800-175483200	Enhancers	Fetal Kidney	kidney
19	chr4:175482800-175485200	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
20	chr4:175483000-175483200	Flanking Active TSS	iPS-20b Cell Line	embryonic stem cell
21	chr4:175483000-175484600	Weak transcription	H9 Cell Line	embryonic stem cell

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