Variant report

Variant rs548925655
Chromosome Location chr22:20286930-20286931
allele C/T
Outlinks Ensembl   UCSC
Chromatin state (count:124 , 50 per page) page: 1 2 3
No. Chromosome Location Chromatin state Cell line Tissue
1 chr22:20285800-20287400 Active TSS Duodenum Smooth Muscle Duodenum
2 chr22:20285800-20287600 Bivalent/Poised TSS HUES48 Cell Line embryonic stem cell
3 chr22:20285800-20287600 Bivalent/Poised TSS HUES6 Cell Line embryonic stem cell
4 chr22:20285800-20287600 Bivalent/Poised TSS iPS-20b Cell Line embryonic stem cell
5 chr22:20285800-20287800 Bivalent/Poised TSS HUES64 Cell Line embryonic stem cell
6 chr22:20286000-20287600 Active TSS H1 Derived Neuronal Progenitor Cultured Cells ES cell derived
7 chr22:20286000-20287800 Bivalent/Poised TSS ES-I3 Cell Line embryonic stem cell
8 chr22:20286000-20287800 Active TSS H9 Cell Line embryonic stem cell
9 chr22:20286000-20287800 Bivalent/Poised TSS hESC Derived CD56+ Ectoderm Cultured Cells ES cell derived
10 chr22:20286000-20288000 Bivalent/Poised TSS iPS-18 Cell Line embryonic stem cell
11 chr22:20286200-20287200 Flanking Bivalent TSS/Enh Fetal Adrenal Gland Adrenal Gland
12 chr22:20286200-20287200 Active TSS Rectal Mucosa Donor 29 rectum
13 chr22:20286200-20287200 Bivalent/Poised TSS Thymus Thymus
14 chr22:20286200-20287400 Active TSS Rectal Smooth Muscle rectum
15 chr22:20286200-20287400 Active TSS Stomach Smooth Muscle stomach
16 chr22:20286200-20287600 Bivalent/Poised TSS H1 Cell Line embryonic stem cell
17 chr22:20286200-20287600 Bivalent/Poised TSS H1 BMP4 Derived Mesendoderm Cultured Cells ES cell derived
18 chr22:20286200-20287600 Active TSS Primary T helper memory cells from peripheral blood 2 blood
19 chr22:20286200-20287600 Active TSS Primary T helper naive cells fromperipheralblood blood
20 chr22:20286200-20287600 Active TSS Primary T cells effector/memory enriched fromperipheralblood blood
21 chr22:20286200-20287600 Active TSS Brain Anterior Caudate brain
22 chr22:20286200-20287600 Active TSS Brain Dorsolateral Prefrontal Cortex brain
23 chr22:20286200-20287600 Active TSS Colon Smooth Muscle Colon
24 chr22:20286200-20287800 Enhancers Sigmoid Colon Sigmoid Colon
25 chr22:20286200-20288000 Active TSS Breast Myoepithelial Primary Cells Breast
26 chr22:20286200-20288000 Flanking Active TSS Primary hematopoietic stem cells G-CSF-mobilized Male --
27 chr22:20286200-20288000 Active TSS Pancreatic Islets Pancreatic Islet
28 chr22:20286400-20287000 Flanking Bivalent TSS/Enh IMR90 fetal lung fibroblasts Cell Line lung
29 chr22:20286400-20287000 Flanking Active TSS Primary T cells fromperipheralblood blood
30 chr22:20286400-20287000 Flanking Active TSS Primary hematopoietic stem cells G-CSF-mobilized Female --
31 chr22:20286400-20287000 Flanking Active TSS Ganglion Eminence derived primary cultured neurospheres brain
32 chr22:20286400-20287000 Flanking Active TSS Brain Hippocampus Middle brain
33 chr22:20286400-20287000 Active TSS Fetal Intestine Small intestine
34 chr22:20286400-20287200 Flanking Active TSS Primary Natural Killer cells fromperipheralblood blood
35 chr22:20286400-20287200 Bivalent/Poised TSS Fetal Intestine Large intestine
36 chr22:20286400-20287200 Flanking Bivalent TSS/Enh Fetal Muscle Leg muscle
37 chr22:20286400-20287200 Flanking Active TSS Placenta Placenta
38 chr22:20286400-20287400 Active TSS Primary mononuclear cells fromperipheralblood Blood
39 chr22:20286400-20287400 Active TSS Brain Cingulate Gyrus brain
40 chr22:20286400-20287400 Active TSS Brain Inferior Temporal Lobe brain
41 chr22:20286400-20287400 Enhancers Fetal Brain Male brain
42 chr22:20286400-20287400 Bivalent/Poised TSS Fetal Brain Female brain
43 chr22:20286400-20287400 Active TSS Gastric stomach
44 chr22:20286400-20287400 Active TSS Left Ventricle heart
45 chr22:20286400-20287400 Active TSS Ovary ovary
46 chr22:20286400-20287400 Active TSS Placenta Amnion Placenta Amnion
47 chr22:20286400-20287400 Active TSS HSMM muscle
48 chr22:20286400-20287600 Flanking Active TSS H1 Derived Mesenchymal Stem Cells ES cell derived
49 chr22:20286400-20287600 Bivalent/Poised TSS hESC Derived CD184+ Endoderm Cultured Cells ES cell derived
50 chr22:20286400-20287600 Active TSS iPS-15b Cell Line embryonic stem cell

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