Variant report

Variant	rs548941595
Chromosome Location	chr11:10227182-10227183
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr11:10227014..10228870-chr11:10386230..10387904,2	K562	blood:
2	chr11:10226516..10229103-chr11:10229118..10231466,3	MCF-7	breast:
3	chr11:10225918..10228486-chr11:10324033..10325945,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000254554	Chromatin interaction

Extended variants
information (count: 3 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv430319	chr11:10027543-10711224	Enhancers Weak transcription Genic enhancers Active TSS ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3' Strong transcription Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	75 gene(s)	inside rSNPs	diseases
2	nsv1039636	chr11:10126747-10280570	Enhancers Weak transcription ZNF genes & repeats Strong transcription Genic enhancers Flanking Active TSS Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
3	nsv515552	chr11:10226268-10228809	ZNF genes & repeats Enhancers Weak transcription Genic enhancers Flanking Active TSS	Chromatin interactive region	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:24 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:10208000-10229000	Weak transcription	Aorta	Aorta
2	chr11:10208800-10229400	Weak transcription	NHLF	lung
3	chr11:10219000-10242200	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
4	chr11:10223800-10229600	Weak transcription	Osteobl	bone
5	chr11:10224800-10227200	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
6	chr11:10225400-10227400	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
7	chr11:10225600-10228400	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
8	chr11:10226000-10227400	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
9	chr11:10226200-10227400	ZNF genes & repeats	Foreskin Keratinocyte Primary Cells skin03	Skin
10	chr11:10226400-10227400	ZNF genes & repeats	Foreskin Fibroblast Primary Cells skin01	Skin
11	chr11:10226400-10227800	Enhancers	Left Ventricle	heart
12	chr11:10226800-10227200	Enhancers	iPS-20b Cell Line	embryonic stem cell
13	chr11:10226800-10227600	Enhancers	HUES48 Cell Line	embryonic stem cell
14	chr11:10226800-10230000	Enhancers	iPS-15b Cell Line	embryonic stem cell
15	chr11:10227000-10227200	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
16	chr11:10227000-10227200	Enhancers	Ovary	ovary
17	chr11:10227000-10227600	Enhancers	Right Atrium	heart
18	chr11:10227000-10227800	Enhancers	H1 Cell Line	embryonic stem cell
19	chr11:10227000-10227800	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
20	chr11:10227000-10227800	Enhancers	iPS DF 19.11 Cell Line	embryonic stem cell
21	chr11:10227000-10227800	Genic enhancers	Foreskin Fibroblast Primary Cells skin02	Skin
22	chr11:10227000-10230200	Enhancers	HUES6 Cell Line	embryonic stem cell
23	chr11:10227000-10230200	Enhancers	HUES64 Cell Line	embryonic stem cell
24	chr11:10227000-10230400	Enhancers	iPS-18 Cell Line	embryonic stem cell

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