Variant report

Variant	rs548986520
Chromosome Location	chr5:36461199-36461200
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 6 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv597819	chr5:36445458-36472990	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
2	nsv1023545	chr5:36448895-36461331	Weak transcription Flanking Active TSS Enhancers Active TSS Bivalent Enhancer	Chromatin interactive region	n/a	inside rSNPs	diseases
3	nsv1016667	chr5:36448895-36464362	ZNF genes & repeats Enhancers Weak transcription Bivalent Enhancer Flanking Active TSS Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
4	esv2763449	chr5:36448895-36464374	Enhancers Bivalent Enhancer Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats	Chromatin interactive region	n/a	inside rSNPs	diseases
5	nsv597820	chr5:36452065-36463088	Enhancers Weak transcription ZNF genes & repeats Bivalent Enhancer Flanking Active TSS Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
6	nsv432743	chr5:36460043-36463043	Enhancers Weak transcription ZNF genes & repeats Bivalent Enhancer	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:18 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:36445800-36462800	Weak transcription	Esophagus	oesophagus
2	chr5:36457800-36462200	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
3	chr5:36457800-36468000	Weak transcription	Fetal Heart	heart
4	chr5:36458200-36462600	Weak transcription	NH-A	brain
5	chr5:36458200-36462800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
6	chr5:36458400-36462200	Weak transcription	Osteobl	bone
7	chr5:36458400-36462400	Weak transcription	HSMMtube	muscle
8	chr5:36459200-36462200	Weak transcription	Muscle Satellite Cultured Cells	--
9	chr5:36459400-36462200	Weak transcription	HSMM	muscle
10	chr5:36459800-36462200	Weak transcription	Hela-S3	cervix
11	chr5:36460400-36462000	Weak transcription	NHEK	skin
12	chr5:36460400-36462400	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
13	chr5:36460400-36462400	Weak transcription	Breast Myoepithelial Primary Cells	Breast
14	chr5:36460400-36462600	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
15	chr5:36460600-36461800	Weak transcription	HMEC	breast
16	chr5:36460600-36462000	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
17	chr5:36460800-36462000	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
18	chr5:36461000-36462000	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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