Variant report

Variant	rs549003968
Chromosome Location	chr4:110970352-110970353
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr4:110970036..110972230-chr4:111118255..111121131,3	MCF-7	breast:

Variant related genes	Relation type
ENSG00000170522	Chromatin interaction

Extended variants
information (count: 2 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv869392	chr4:110945459-111235071	Flanking Active TSS Weak transcription Strong transcription Active TSS Enhancers Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	22 gene(s)	inside rSNPs	diseases
2	nsv595145	chr4:110969572-110982248	Weak transcription Enhancers Genic enhancers Flanking Active TSS Strong transcription Bivalent Enhancer ZNF genes & repeats Active TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region miRNA target site	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:68 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:110963400-110972600	Weak transcription	Duodenum Mucosa	Duodenum
2	chr4:110963400-110976200	Weak transcription	Fetal Intestine Large	intestine
3	chr4:110963600-110971000	Weak transcription	Liver	Liver
4	chr4:110963800-110974600	Weak transcription	Fetal Muscle Trunk	muscle
5	chr4:110964600-110971200	Weak transcription	iPS-18 Cell Line	embryonic stem cell
6	chr4:110964600-110971200	Weak transcription	Brain Angular Gyrus	brain
7	chr4:110964600-110971200	Weak transcription	HepG2	liver
8	chr4:110964600-110971400	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
9	chr4:110964600-110972000	Weak transcription	H1 Cell Line	embryonic stem cell
10	chr4:110964600-110972000	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
11	chr4:110964600-110972000	Weak transcription	HSMM	muscle
12	chr4:110964600-110972200	Weak transcription	Rectal Mucosa Donor 29	rectum
13	chr4:110964600-110975200	Weak transcription	Fetal Heart	heart
14	chr4:110964600-110976600	Weak transcription	ES-I3 Cell Line	embryonic stem cell
15	chr4:110964600-110976600	Weak transcription	Brain Inferior Temporal Lobe	brain
16	chr4:110964600-110981000	Weak transcription	Adipose Nuclei	Adipose
17	chr4:110964600-110981800	Weak transcription	Brain Anterior Caudate	brain
18	chr4:110964600-111004000	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
19	chr4:110964800-110971400	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
20	chr4:110964800-110976400	Weak transcription	Fetal Kidney	kidney
21	chr4:110964800-110982800	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
22	chr4:110965000-110972200	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
23	chr4:110965000-110974200	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
24	chr4:110965000-110982000	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
25	chr4:110965200-110976600	Weak transcription	HSMMtube	muscle
26	chr4:110965200-110986600	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
27	chr4:110965400-110970800	Weak transcription	K562	blood
28	chr4:110965400-110994200	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
29	chr4:110965600-110971600	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
30	chr4:110966000-110971400	Weak transcription	NHLF	lung
31	chr4:110966000-110972600	Weak transcription	NHEK	skin
32	chr4:110966200-110970800	Weak transcription	Dnd41	blood
33	chr4:110966600-110972200	Weak transcription	H9 Cell Line	embryonic stem cell
34	chr4:110966600-110972400	Weak transcription	Rectal Mucosa Donor 31	rectum
35	chr4:110966800-110974000	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
36	chr4:110966800-110982000	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
37	chr4:110967600-110980000	Strong transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
38	chr4:110967800-110971400	Weak transcription	HUES6 Cell Line	embryonic stem cell
39	chr4:110967800-110976600	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
40	chr4:110968000-110971400	Weak transcription	Fetal Stomach	stomach
41	chr4:110968000-110972000	Weak transcription	NH-A	brain
42	chr4:110968000-110976600	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
43	chr4:110968200-110971200	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
44	chr4:110968200-110972000	Weak transcription	Primary hematopoietic stem cells short term culture	blood
45	chr4:110968200-110972200	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
46	chr4:110968200-110972600	Weak transcription	Fetal Brain Female	brain
47	chr4:110968200-110974000	Weak transcription	Fetal Lung	lung
48	chr4:110968200-110976200	Weak transcription	Sigmoid Colon	Sigmoid Colon
49	chr4:110968200-110976400	Weak transcription	Brain Substantia Nigra	brain
50	chr4:110968200-110976600	Weak transcription	NHDF-Ad	bronchial

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links