Variant report

Variant	rs549013072
Chromosome Location	chr6:44511283-44511284
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 4 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv5283	chr6:44505982-44517131	Enhancers Bivalent Enhancer Weak transcription Flanking Active TSS Bivalent/Poised TSS Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
2	esv3499026	chr6:44510424-44516522	Weak transcription Enhancers Flanking Active TSS Bivalent/Poised TSS Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
3	esv3499029	chr6:44510824-44516422	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
4	esv3499031	chr6:44511098-44516312	Enhancers Weak transcription	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases

No data

Chromatin state (count:14 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:44509200-44511600	Enhancers	iPS DF 6.9 Cell Line	embryonic stem cell
2	chr6:44509400-44511400	Enhancers	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
3	chr6:44509800-44513000	Weak transcription	H9 Cell Line	embryonic stem cell
4	chr6:44510200-44511400	Enhancers	iPS DF 19.11 Cell Line	embryonic stem cell
5	chr6:44510200-44511600	Enhancers	Psoas Muscle	Psoas
6	chr6:44510600-44511400	Enhancers	HUES6 Cell Line	embryonic stem cell
7	chr6:44510600-44511600	Enhancers	Ovary	ovary
8	chr6:44511000-44511600	Enhancers	iPS-20b Cell Line	embryonic stem cell
9	chr6:44511000-44511600	Enhancers	Skeletal Muscle Male	skeletal muscle
10	chr6:44511000-44513000	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
11	chr6:44511000-44516000	Weak transcription	HSMMtube	muscle
12	chr6:44511000-44516800	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
13	chr6:44511200-44511600	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
14	chr6:44511200-44511800	Weak transcription	HUES64 Cell Line	embryonic stem cell

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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