Variant report

Variant	rs549064380
Chromosome Location	chr4:91288096-91288097
allele	-/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	POLR2A	chr4:91288032-91288113	MCF10A-Er-Src	breast:	n/a	n/a

Variant related genes	Relation type
RN7SKP248	TF binding region

Extended variants
information (count: 32 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:32 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv470053	chr4:90879613-91439573	Enhancers Weak transcription Flanking Bivalent TSS/Enh Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS Active TSS Transcr. at gene 5' and 3' Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases
2	nsv931074	chr4:90970476-91753697	Enhancers Strong transcription Bivalent/Poised TSS Weak transcription Flanking Bivalent TSS/Enh ZNF genes & repeats Flanking Active TSS Active TSS Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	14 gene(s)	inside rSNPs	diseases
3	nsv1007826	chr4:91049593-91438961	Enhancers Active TSS Bivalent/Poised TSS Weak transcription Flanking Bivalent TSS/Enh Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Genic enhancers Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
4	nsv537177	chr4:91049593-91438961	Bivalent/Poised TSS Enhancers Weak transcription Strong transcription ZNF genes & repeats Flanking Active TSS Flanking Bivalent TSS/Enh Active TSS Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
5	nsv999065	chr4:91049593-91520073	Enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Weak transcription Active TSS Bivalent/Poised TSS Bivalent Enhancer Flanking Active TSS Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
6	esv2763804	chr4:91261413-91291516	Enhancers Weak transcription Active TSS	TF binding region Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	n/a
7	nsv1006975	chr4:91268174-91298909	Weak transcription Enhancers Active TSS	TF binding region Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	n/a
8	esv1831446	chr4:91283134-91291516	Weak transcription	TF binding region lncRNA	1 gene(s)	inside rSNPs	n/a
9	esv1827765	chr4:91283146-91291516	Weak transcription	TF binding region lncRNA	1 gene(s)	inside rSNPs	n/a
10	esv1829133	chr4:91286902-91292403	Weak transcription	TF binding region lncRNA	1 gene(s)	inside rSNPs	n/a
11	esv1825166	chr4:91287152-91291516	Weak transcription	TF binding region lncRNA	1 gene(s)	inside rSNPs	n/a
12	esv1832048	chr4:91287152-91291516	Weak transcription	TF binding region lncRNA	1 gene(s)	inside rSNPs	n/a
13	esv1833414	chr4:91287156-91291516	Weak transcription	TF binding region lncRNA	1 gene(s)	inside rSNPs	n/a
14	esv2421773	chr4:91287156-91291516	Weak transcription	TF binding region lncRNA	1 gene(s)	inside rSNPs	n/a
15	nsv441898	chr4:91287156-91291516	Weak transcription	TF binding region lncRNA	1 gene(s)	inside rSNPs	n/a
16	nsv435791	chr4:91287164-91292304	Weak transcription	TF binding region lncRNA	1 gene(s)	inside rSNPs	n/a
17	esv1825632	chr4:91287204-91292199	Weak transcription	TF binding region lncRNA	1 gene(s)	inside rSNPs	n/a
18	esv1826538	chr4:91287204-91292199	Weak transcription	TF binding region lncRNA	1 gene(s)	inside rSNPs	n/a
19	esv1827041	chr4:91287204-91292199	Weak transcription	TF binding region lncRNA	1 gene(s)	inside rSNPs	n/a
20	esv1827850	chr4:91287204-91292199	Weak transcription	TF binding region lncRNA	1 gene(s)	inside rSNPs	n/a
21	esv1828340	chr4:91287204-91292199	Weak transcription	TF binding region lncRNA	1 gene(s)	inside rSNPs	n/a
22	esv1826092	chr4:91287204-91297436	Enhancers Weak transcription	TF binding region lncRNA	1 gene(s)	inside rSNPs	n/a
23	esv1826169	chr4:91287204-91297436	Weak transcription Enhancers	TF binding region lncRNA	1 gene(s)	inside rSNPs	n/a
24	esv1830936	chr4:91287204-91546380	Enhancers Weak transcription ZNF genes & repeats Strong transcription Active TSS Flanking Active TSS	TF binding region Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
25	esv1827360	chr4:91287271-91292403	Weak transcription	TF binding region lncRNA	1 gene(s)	inside rSNPs	n/a
26	esv20790	chr4:91287888-91292489	Weak transcription	TF binding region lncRNA	1 gene(s)	inside rSNPs	n/a
27	esv1829535	chr4:91287928-91292161	Weak transcription	TF binding region lncRNA	1 gene(s)	inside rSNPs	n/a
28	esv1831475	chr4:91287928-91292161	Weak transcription	TF binding region lncRNA	1 gene(s)	inside rSNPs	n/a
29	esv1833492	chr4:91287928-91292161	Weak transcription	TF binding region lncRNA	1 gene(s)	inside rSNPs	n/a
30	esv1825082	chr4:91287928-91293977	Weak transcription	TF binding region lncRNA	1 gene(s)	inside rSNPs	n/a
31	esv1825483	chr4:91287928-91293977	Weak transcription	TF binding region lncRNA	1 gene(s)	inside rSNPs	n/a
32	esv1827637	chr4:91287928-91293977	Weak transcription	TF binding region lncRNA	1 gene(s)	inside rSNPs	n/a

No data

Chromatin state (count:0 , 50 per page) page:

No data

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dbSNP/dbVar ID: rs12345 /nsv7879
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