Variant report

Variant	rs549065574
Chromosome Location	chr8:19625448-19625449
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 6 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv949636	chr8:18957705-19664732	Enhancers Weak transcription Active TSS Strong transcription Flanking Active TSS Genic enhancers Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	18 gene(s)	inside rSNPs	diseases
2	nsv949304	chr8:19199688-19625912	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Genic enhancers Strong transcription Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	11 gene(s)	inside rSNPs	diseases
3	nsv890625	chr8:19368697-19799641	Strong transcription Weak transcription Enhancers Bivalent Enhancer Genic enhancers Flanking Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Active TSS Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	19 gene(s)	inside rSNPs	diseases
4	nsv1021731	chr8:19515149-19643313	Flanking Bivalent TSS/Enh Weak transcription Bivalent Enhancer Enhancers Bivalent/Poised TSS Flanking Active TSS Active TSS ZNF genes & repeats Genic enhancers Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
5	nsv610759	chr8:19561997-20068842	Enhancers Strong transcription Bivalent Enhancer Weak transcription Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	21 gene(s)	inside rSNPs	diseases
6	nsv890629	chr8:19625038-19665351	Enhancers Active TSS Weak transcription Flanking Active TSS Bivalent Enhancer	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:19 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:19624000-19626000	Enhancers	Brain Substantia Nigra	brain
2	chr8:19624200-19625600	Enhancers	Brain Cingulate Gyrus	brain
3	chr8:19624200-19625800	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
4	chr8:19624200-19625800	Enhancers	Monocytes-CD14+_RO01746	blood
5	chr8:19624400-19625600	Enhancers	Primary monocytes fromperipheralblood	blood
6	chr8:19624400-19625600	Enhancers	Primary hematopoietic stem cells	blood
7	chr8:19624400-19625800	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
8	chr8:19624400-19625800	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
9	chr8:19624400-19625800	Enhancers	Brain Anterior Caudate	brain
10	chr8:19624400-19626200	Enhancers	Primary hematopoietic stem cells short term culture	blood
11	chr8:19624800-19625600	Flanking Active TSS	K562	blood
12	chr8:19625000-19625800	Enhancers	Fetal Adrenal Gland	Adrenal Gland
13	chr8:19625000-19626200	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
14	chr8:19625200-19627600	Enhancers	Placenta Amnion	Placenta Amnion
15	chr8:19625400-19625600	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
16	chr8:19625400-19625600	Enhancers	Brain Dorsolateral Prefrontal Cortex	brain
17	chr8:19625400-19625600	Enhancers	Placenta	Placenta
18	chr8:19625400-19626200	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
19	chr8:19625400-19626200	Enhancers	Pancreas	Pancrea

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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