Variant report

Variant	rs549077772
Chromosome Location	chr10:27991152-27991153
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 4 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv550241	chr10:27569521-28025771	Enhancers ZNF genes & repeats Strong transcription Weak transcription Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' Active TSS Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	27 gene(s)	inside rSNPs	diseases
2	esv3368825	chr10:27864181-28043820	Enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Weak transcription Bivalent Enhancer Bivalent/Poised TSS Active TSS ZNF genes & repeats Strong transcription Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	2 gene(s)	inside rSNPs	diseases
3	esv3430719	chr10:27989546-27991744	Weak transcription Enhancers Active TSS Flanking Active TSS	n/a	n/a	inside rSNPs	diseases
4	esv3404415	chr10:27990046-27991294	Enhancers Flanking Active TSS Weak transcription Active TSS	n/a	n/a	inside rSNPs	diseases

No data

Chromatin state (count:33 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:27985800-28001400	Weak transcription	Aorta	Aorta
2	chr10:27988800-27991400	Enhancers	HUES48 Cell Line	embryonic stem cell
3	chr10:27988800-27992000	Enhancers	Cortex derived primary cultured neurospheres	brain
4	chr10:27989200-27991600	Enhancers	iPS-18 Cell Line	embryonic stem cell
5	chr10:27989400-27991400	Enhancers	iPS-15b Cell Line	embryonic stem cell
6	chr10:27989400-27991400	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
7	chr10:27989400-27991600	Enhancers	iPS-20b Cell Line	embryonic stem cell
8	chr10:27989600-27991600	Enhancers	HUES64 Cell Line	embryonic stem cell
9	chr10:27990000-27991200	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
10	chr10:27990600-27991600	Enhancers	ES-I3 Cell Line	embryonic stem cell
11	chr10:27990800-27991200	Enhancers	HUES6 Cell Line	embryonic stem cell
12	chr10:27990800-27991200	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
13	chr10:27990800-27991200	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
14	chr10:27990800-27991200	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
15	chr10:27990800-27991200	Enhancers	Skeletal Muscle Male	skeletal muscle
16	chr10:27990800-27991400	Enhancers	Fetal Muscle Leg	muscle
17	chr10:27990800-27991600	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
18	chr10:27990800-27991600	Enhancers	Fetal Lung	lung
19	chr10:27990800-27991600	Enhancers	Fetal Stomach	stomach
20	chr10:27990800-27991800	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
21	chr10:27990800-27992000	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
22	chr10:27991000-27991200	Enhancers	Brain Anterior Caudate	brain
23	chr10:27991000-27991200	Enhancers	Ovary	ovary
24	chr10:27991000-27991200	Enhancers	NHDF-Ad	bronchial
25	chr10:27991000-27991400	Enhancers	H1 Cell Line	embryonic stem cell
26	chr10:27991000-27991400	Enhancers	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
27	chr10:27991000-27991400	Flanking Active TSS	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
28	chr10:27991000-27991400	Enhancers	iPS DF 6.9 Cell Line	embryonic stem cell
29	chr10:27991000-27991400	Enhancers	Fetal Kidney	kidney
30	chr10:27991000-27991600	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
31	chr10:27991000-27991600	Flanking Active TSS	Stomach Smooth Muscle	stomach
32	chr10:27991000-27992000	Flanking Active TSS	H9 Derived Neuron Cultured Cells	ES cell derived
33	chr10:27991000-27992200	Flanking Active TSS	Osteobl	bone

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