Variant report

Variant	rs549078961
Chromosome Location	chr4:15626964-15626965
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr4:15626638..15628672-chr4:15655533..15657552,3	MCF-7	breast:

Variant related genes	Relation type
ENSG00000118564	Chromatin interaction

Extended variants
information (count: 8 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:8 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3448986	chr4:14928802-15805558	Active TSS Strong transcription Flanking Active TSS Transcr. at gene 5' and 3' Weak transcription Enhancers ZNF genes & repeats Bivalent/Poised TSS Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	52 gene(s)	inside rSNPs	diseases
2	esv2757923	chr4:15444617-15749520	Weak transcription Flanking Active TSS Enhancers Strong transcription Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	23 gene(s)	inside rSNPs	diseases
3	esv2759227	chr4:15444617-15749520	Strong transcription Weak transcription Enhancers ZNF genes & repeats Active TSS Flanking Active TSS Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	23 gene(s)	inside rSNPs	diseases
4	nsv428439	chr4:15556961-15749520	Enhancers Strong transcription Weak transcription Genic enhancers Flanking Active TSS Active TSS Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	22 gene(s)	inside rSNPs	diseases
5	nsv1012988	chr4:15597510-16091527	Weak transcription Enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Strong transcription Active TSS Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	28 gene(s)	inside rSNPs	diseases
6	nsv518830	chr4:15610771-15672200	Flanking Active TSS Enhancers Bivalent/Poised TSS ZNF genes & repeats Weak transcription Strong transcription Genic enhancers Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
7	nsv521183	chr4:15610771-15692136	Genic enhancers Enhancers Weak transcription Strong transcription Flanking Active TSS Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	19 gene(s)	inside rSNPs	diseases
8	esv20477	chr4:15626950-15627587	Strong transcription Genic enhancers Weak transcription Enhancers ZNF genes & repeats	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:123 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:15568400-15655600	Weak transcription	Gastric	stomach
2	chr4:15600800-15653000	Weak transcription	Colonic Mucosa	Colon
3	chr4:15601000-15651600	Weak transcription	Small Intestine	intestine
4	chr4:15602600-15655600	Weak transcription	Pancreas	Pancrea
5	chr4:15605800-15650200	Weak transcription	Stomach Mucosa	stomach
6	chr4:15606000-15633800	Weak transcription	Skeletal Muscle Male	skeletal muscle
7	chr4:15613400-15635000	Weak transcription	HSMMtube	muscle
8	chr4:15617800-15627400	ZNF genes & repeats	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
9	chr4:15618600-15627000	Weak transcription	Right Ventricle	heart
10	chr4:15618600-15651000	Weak transcription	Spleen	Spleen
11	chr4:15621000-15632600	Strong transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
12	chr4:15621600-15627000	Weak transcription	Brain Angular Gyrus	brain
13	chr4:15621800-15627000	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
14	chr4:15621800-15627000	Weak transcription	Esophagus	oesophagus
15	chr4:15621800-15627000	Weak transcription	Psoas Muscle	Psoas
16	chr4:15622200-15655400	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
17	chr4:15622400-15638000	Weak transcription	HepG2	liver
18	chr4:15622400-15639600	Strong transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
19	chr4:15622600-15627000	Weak transcription	Sigmoid Colon	Sigmoid Colon
20	chr4:15622600-15629200	Weak transcription	Pancreatic Islets	Pancreatic Islet
21	chr4:15622600-15645800	Weak transcription	Aorta	Aorta
22	chr4:15622800-15635200	Weak transcription	Fetal Stomach	stomach
23	chr4:15623200-15627000	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
24	chr4:15623400-15638000	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
25	chr4:15623600-15627000	Weak transcription	Brain Inferior Temporal Lobe	brain
26	chr4:15623800-15627000	Weak transcription	Ovary	ovary
27	chr4:15623800-15627000	Weak transcription	Thymus	Thymus
28	chr4:15623800-15627800	Strong transcription	Primary hematopoietic stem cells	blood
29	chr4:15623800-15633800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
30	chr4:15623800-15635200	Weak transcription	Fetal Intestine Small	intestine
31	chr4:15623800-15635400	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
32	chr4:15624200-15636000	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
33	chr4:15624400-15627600	Genic enhancers	Primary T helper cells fromperipheralblood	blood
34	chr4:15624400-15629600	Strong transcription	Ganglion Eminence derived primary cultured neurospheres	brain
35	chr4:15624400-15629800	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
36	chr4:15624600-15630200	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
37	chr4:15624800-15632800	Strong transcription	Dnd41	blood
38	chr4:15625000-15627000	Weak transcription	H9 Cell Line	embryonic stem cell
39	chr4:15625200-15627600	Genic enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
40	chr4:15625200-15632600	Strong transcription	HSMM	muscle
41	chr4:15625200-15640000	Weak transcription	iPS-15b Cell Line	embryonic stem cell
42	chr4:15625200-15644800	Strong transcription	Primary monocytes fromperipheralblood	blood
43	chr4:15625400-15627600	Strong transcription	IMR90 fetal lung fibroblasts Cell Line	lung
44	chr4:15625400-15627800	Strong transcription	Primary mononuclear cells fromperipheralblood	Blood
45	chr4:15625400-15632400	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
46	chr4:15625400-15643200	Strong transcription	Cortex derived primary cultured neurospheres	brain
47	chr4:15625600-15627600	Strong transcription	A549	lung
48	chr4:15625600-15628000	Strong transcription	HUVEC	blood vessel
49	chr4:15625600-15629600	Strong transcription	GM12878-XiMat	blood
50	chr4:15625600-15629800	Strong transcription	HUES6 Cell Line	embryonic stem cell

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