Variant report

Variant	rs549095261
Chromosome Location	chr13:40029362-40029363
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 6 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2754118	chr13:39347702-40222644	Flanking Active TSS Enhancers Weak transcription ZNF genes & repeats Bivalent Enhancer Strong transcription Active TSS Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	22 gene(s)	inside rSNPs	diseases
2	nsv1054600	chr13:39801283-40545027	Weak transcription Enhancers ZNF genes & repeats Active TSS Flanking Active TSS Strong transcription Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA	16 gene(s)	inside rSNPs	diseases
3	nsv1011	chr13:40008962-40034177	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Genic enhancers Active TSS	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
4	nsv561536	chr13:40015948-40043224	Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS Strong transcription Genic enhancers Active TSS	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
5	esv3346508	chr13:40027802-40029800	Weak transcription Enhancers Flanking Active TSS	n/a	n/a	inside rSNPs	diseases
6	esv2428792	chr13:40028048-40029641	Enhancers Weak transcription Flanking Active TSS	n/a	n/a	inside rSNPs	diseases

No data

Chromatin state (count:30 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr13:40023400-40035000	Weak transcription	Aorta	Aorta
2	chr13:40025600-40033400	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
3	chr13:40026600-40029400	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
4	chr13:40026600-40029600	Weak transcription	HSMM	muscle
5	chr13:40026600-40033400	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
6	chr13:40027200-40033200	Weak transcription	HSMMtube	muscle
7	chr13:40027400-40029400	Weak transcription	Brain Substantia Nigra	brain
8	chr13:40027400-40029600	Weak transcription	Fetal Lung	lung
9	chr13:40027400-40033400	Weak transcription	Fetal Muscle Leg	muscle
10	chr13:40027600-40029400	Weak transcription	Brain Anterior Caudate	brain
11	chr13:40027600-40030200	Weak transcription	Adipose Nuclei	Adipose
12	chr13:40028000-40029400	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
13	chr13:40028000-40029600	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
14	chr13:40028000-40029800	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
15	chr13:40028000-40030200	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
16	chr13:40028200-40029600	Weak transcription	ES-I3 Cell Line	embryonic stem cell
17	chr13:40028200-40029800	Weak transcription	Placenta Amnion	Placenta Amnion
18	chr13:40028200-40030000	Weak transcription	Rectal Smooth Muscle	rectum
19	chr13:40028200-40030600	Enhancers	Fetal Heart	heart
20	chr13:40028200-40031200	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
21	chr13:40028200-40032400	Weak transcription	Ovary	ovary
22	chr13:40028200-40032600	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
23	chr13:40028200-40033200	Weak transcription	Skeletal Muscle Male	skeletal muscle
24	chr13:40029200-40029400	Enhancers	Lung	lung
25	chr13:40029200-40029400	Enhancers	Psoas Muscle	Psoas
26	chr13:40029200-40029400	Enhancers	Spleen	Spleen
27	chr13:40029200-40029600	Enhancers	Right Ventricle	heart
28	chr13:40029200-40029800	Enhancers	Left Ventricle	heart
29	chr13:40029200-40029800	Enhancers	Right Atrium	heart
30	chr13:40029200-40030200	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived

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