Variant report

Variant	rs549100170
Chromosome Location	chr9:110651061-110651062
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr9:110645920..110647736-chr9:110648622..110651192,2	MCF-7	breast:

Extended variants
information (count: 2 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1051101	chr9:110548257-110697253	Enhancers Weak transcription Bivalent Enhancer Flanking Active TSS Active TSS ZNF genes & repeats Strong transcription Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
2	nsv893701	chr9:110650482-110709587	Weak transcription Enhancers Flanking Active TSS Active TSS ZNF genes & repeats Strong transcription Bivalent Enhancer	TF binding region Chromatin interactive region	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:20 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:110635800-110656800	Weak transcription	H9 Cell Line	embryonic stem cell
2	chr9:110644800-110658800	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
3	chr9:110646800-110652600	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
4	chr9:110649200-110657000	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
5	chr9:110650600-110652200	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
6	chr9:110650800-110651800	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
7	chr9:110650800-110651800	Enhancers	Adipose Nuclei	Adipose
8	chr9:110651000-110651400	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
9	chr9:110651000-110651600	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
10	chr9:110651000-110651600	Enhancers	Cortex derived primary cultured neurospheres	brain
11	chr9:110651000-110651600	Enhancers	Fetal Lung	lung
12	chr9:110651000-110651600	Enhancers	Fetal Muscle Leg	muscle
13	chr9:110651000-110651600	Enhancers	Right Atrium	heart
14	chr9:110651000-110651600	Enhancers	Skeletal Muscle Male	skeletal muscle
15	chr9:110651000-110651600	Enhancers	NHDF-Ad	bronchial
16	chr9:110651000-110651800	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
17	chr9:110651000-110651800	Enhancers	Ovary	ovary
18	chr9:110651000-110652000	Enhancers	Breast Myoepithelial Primary Cells	Breast
19	chr9:110651000-110652200	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
20	chr9:110651000-110652200	Enhancers	Skeletal Muscle Female	skeletal muscle

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