Variant report

Variant	rs549101752
Chromosome Location	chr5:91145630-91145631
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 7 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:7 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv882370	chr5:90986181-91287437	Enhancers Bivalent Enhancer Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
2	nsv882372	chr5:91018052-91221647	Enhancers Flanking Active TSS Weak transcription ZNF genes & repeats Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
3	nsv1017504	chr5:91092920-91178854	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	n/a
4	nsv830396	chr5:91121355-91343236	Flanking Active TSS Weak transcription Enhancers Bivalent Enhancer Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
5	nsv882373	chr5:91144658-91275313	Weak transcription Enhancers Active TSS Flanking Active TSS	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	n/a
6	nsv882374	chr5:91144658-91287437	Enhancers Weak transcription Flanking Active TSS Active TSS	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	n/a
7	nsv882375	chr5:91144658-91383848	Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:15 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:91142800-91146400	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
2	chr5:91143200-91146600	Enhancers	iPS-20b Cell Line	embryonic stem cell
3	chr5:91143800-91146200	Enhancers	Hela-S3	cervix
4	chr5:91143800-91147400	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
5	chr5:91144000-91146000	Enhancers	A549	lung
6	chr5:91144200-91146200	Enhancers	NH-A	brain
7	chr5:91144200-91146400	Enhancers	HUES6 Cell Line	embryonic stem cell
8	chr5:91144400-91146200	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
9	chr5:91144400-91146400	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
10	chr5:91144400-91146400	Enhancers	HUES48 Cell Line	embryonic stem cell
11	chr5:91144400-91146400	Enhancers	iPS-15b Cell Line	embryonic stem cell
12	chr5:91144400-91146400	Enhancers	iPS-18 Cell Line	embryonic stem cell
13	chr5:91144400-91146600	Enhancers	HUES64 Cell Line	embryonic stem cell
14	chr5:91145000-91146000	Weak transcription	HMEC	breast
15	chr5:91145000-91147800	Enhancers	ES-I3 Cell Line	embryonic stem cell

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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