Variant report

Variant	rs549115543
Chromosome Location	chr7:140004403-140004404
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr7:139975596..139977412-chr7:140003455..140004991,2	K562	blood:
2	chr7:139983287..139985167-chr7:140004183..140006498,2	K562	blood:
3	chr7:140003129..140009929-chr7:140011645..140017997,10	MCF-7	breast:
4	chr7:139874353..139878653-chr7:140002839..140006488,5	MCF-7	breast:
5	chr7:139874404..139875497-chr7:140004011..140004953,5	MCF-7	breast:
6	chr7:139875385..139877757-chr7:140002862..140004981,2	K562	blood:
7	chr7:139735195..139737429-chr7:140002839..140005708,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000006459	Chromatin interaction
ENSG00000260231	Chromatin interaction

Extended variants
information (count: 4 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv889247	chr7:139855216-140033631	Weak transcription Flanking Active TSS Active TSS Enhancers ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS Genic enhancers Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	18 gene(s)	inside rSNPs	diseases
2	nsv1026255	chr7:139944473-140043299	Flanking Active TSS Enhancers Weak transcription Bivalent/Poised TSS Strong transcription Genic enhancers Active TSS Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	9 gene(s)	inside rSNPs	diseases
3	nsv824319	chr7:140004029-140009178	Weak transcription Enhancers Flanking Active TSS	Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
4	nsv442070	chr7:140004043-140008466	Enhancers Flanking Active TSS Weak transcription	Chromatin interactive region	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:21 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:139986800-140007800	Weak transcription	Fetal Intestine Small	intestine
2	chr7:139999600-140008800	Weak transcription	Colonic Mucosa	Colon
3	chr7:140003200-140006600	Enhancers	Monocytes-CD14+_RO01746	blood
4	chr7:140003200-140006800	Enhancers	Primary monocytes fromperipheralblood	blood
5	chr7:140003400-140004600	Enhancers	Primary B cells from cord blood	blood
6	chr7:140003400-140010000	Weak transcription	Pancreatic Islets	Pancreatic Islet
7	chr7:140003600-140004800	Enhancers	Primary B cells from peripheral blood	blood
8	chr7:140004000-140004600	Enhancers	Primary T killer naive cells fromperipheralblood	blood
9	chr7:140004000-140004600	Enhancers	Primary T killer memory cells from peripheral blood	blood
10	chr7:140004000-140004600	Enhancers	Primary mononuclear cells fromperipheralblood	Blood
11	chr7:140004000-140005000	Enhancers	Primary Natural Killer cells fromperipheralblood	blood
12	chr7:140004200-140004600	Enhancers	Primary T cells fromperipheralblood	blood
13	chr7:140004200-140004600	Enhancers	Primary T helper cells PMA-I stimulated	--
14	chr7:140004200-140004600	Enhancers	Primary T helper 17 cells PMA-I stimulated	--
15	chr7:140004200-140004600	Enhancers	Primary T helper cells fromperipheralblood	blood
16	chr7:140004200-140004600	Enhancers	Duodenum Mucosa	Duodenum
17	chr7:140004200-140004600	Enhancers	Small Intestine	intestine
18	chr7:140004200-140004600	Flanking Active TSS	HepG2	liver
19	chr7:140004200-140004800	Flanking Active TSS	Primary neutrophils fromperipheralblood	blood
20	chr7:140004200-140004800	Enhancers	Rectal Mucosa Donor 29	rectum
21	chr7:140004200-140004800	Enhancers	Stomach Mucosa	stomach

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