Variant report

Variant	rs549120526
Chromosome Location	chr2:172973427-172973428
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr2:172970741..172972520-chr2:172972627..172974795,2	K562	blood:
2	chr2:172966348..172968822-chr2:172971677..172974375,3	MCF-7	breast:
3	chr2:172751399..172753053-chr2:172972072..172974852,2	MCF-7	breast:
4	chr2:172972600..172974190-chr2:172975792..172977649,2	K562	blood:

Variant related genes	Relation type
ENSG00000236651	Chromatin interaction
ENSG00000115844	Chromatin interaction

Extended variants
information (count: 1 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv518335	chr2:172972971-172974749	Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS Enhancers Weak transcription Flanking Active TSS	Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:31 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:172968000-172974800	Weak transcription	Gastric	stomach
2	chr2:172970600-172973600	Bivalent Enhancer	Primary Natural Killer cells fromperipheralblood	blood
3	chr2:172971200-172973600	Bivalent Enhancer	Primary T cells fromperipheralblood	blood
4	chr2:172971600-172973600	Bivalent Enhancer	Primary monocytes fromperipheralblood	blood
5	chr2:172971600-172975200	Bivalent Enhancer	Fetal Thymus	thymus
6	chr2:172971800-172974200	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
7	chr2:172971800-172974200	Weak transcription	NHEK	skin
8	chr2:172971800-172974400	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
9	chr2:172971800-172974600	Weak transcription	HMEC	breast
10	chr2:172972200-172973800	Bivalent Enhancer	Primary T helper naive cells fromperipheralblood	blood
11	chr2:172972600-172973800	Bivalent Enhancer	iPS DF 6.9 Cell Line	embryonic stem cell
12	chr2:172972600-172974200	Bivalent Enhancer	Primary hematopoietic stem cells G-CSF-mobilized Male	--
13	chr2:172972600-172974400	Bivalent Enhancer	H1 Cell Line	embryonic stem cell
14	chr2:172972600-172974800	Bivalent Enhancer	ES-UCSF4 Cell Line	embryonic stem cell
15	chr2:172973000-172973600	Bivalent Enhancer	Primary T helper cells PMA-I stimulated	--
16	chr2:172973000-172978200	Weak transcription	NHDF-Ad	bronchial
17	chr2:172973200-172973600	Enhancers	Foreskin Fibroblast Primary Cells skin02	Skin
18	chr2:172973200-172973600	Bivalent Enhancer	Placenta Amnion	Placenta Amnion
19	chr2:172973200-172973600	Flanking Bivalent TSS/Enh	HepG2	liver
20	chr2:172973200-172973800	Bivalent Enhancer	Stomach Smooth Muscle	stomach
21	chr2:172973200-172974000	Bivalent Enhancer	Primary T cells from cord blood	blood
22	chr2:172973200-172974400	Bivalent Enhancer	HUES48 Cell Line	embryonic stem cell
23	chr2:172973200-172974600	Bivalent Enhancer	Primary hematopoietic stem cells G-CSF-mobilized Female	--
24	chr2:172973400-172973600	Bivalent Enhancer	ES-I3 Cell Line	embryonic stem cell
25	chr2:172973400-172973600	Bivalent Enhancer	ES-WA7 Cell Line	embryonic stem cell
26	chr2:172973400-172973600	Bivalent Enhancer	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
27	chr2:172973400-172973600	Flanking Bivalent TSS/Enh	iPS-15b Cell Line	embryonic stem cell
28	chr2:172973400-172973600	Bivalent Enhancer	Brain Germinal Matrix	brain
29	chr2:172973400-172973800	Bivalent Enhancer	Primary T regulatory cells fromperipheralblood	blood
30	chr2:172973400-172974000	Bivalent Enhancer	Foreskin Fibroblast Primary Cells skin01	Skin
31	chr2:172973400-172974800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived

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