Variant report

Variant	rs549122097
Chromosome Location	chr11:66909871-66909872
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr11:66903289..66906523-chr11:66908304..66911328,3	MCF-7	breast:
2	chr11:66899050..66903329-chr11:66906859..66910351,4	MCF-7	breast:
3	chr11:66886679..66888867-chr11:66909450..66913020,3	MCF-7	breast:

Variant related genes	Relation type
ENSG00000173120	Chromatin interaction

Extended variants
information (count: 8 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:8 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv531397	chr11:66653381-67465721	Active TSS Enhancers Strong transcription Flanking Active TSS Weak transcription Transcr. at gene 5' and 3' Genic enhancers Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	271 gene(s)	inside rSNPs	diseases
2	nsv532287	chr11:66784014-67023899	Weak transcription Strong transcription Bivalent Enhancer Enhancers Flanking Active TSS Active TSS Transcr. at gene 5' and 3' Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	48 gene(s)	inside rSNPs	diseases
3	esv19488	chr11:66907429-66917095	Strong transcription Weak transcription ZNF genes & repeats Genic enhancers Enhancers Flanking Active TSS Transcr. at gene 5' and 3'	Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
4	nsv555247	chr11:66908750-66914661	Genic enhancers Strong transcription Weak transcription Enhancers Flanking Active TSS Transcr. at gene 5' and 3'	Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
5	nsv555248	chr11:66908750-66915614	Strong transcription Weak transcription Enhancers Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3'	Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
6	nsv555249	chr11:66908750-66916262	Weak transcription Strong transcription Enhancers Genic enhancers Transcr. at gene 5' and 3' Flanking Active TSS	Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
7	nsv555250	chr11:66908750-66916676	Weak transcription Strong transcription Enhancers Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3'	Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
8	nsv555251	chr11:66908750-66916837	Strong transcription Weak transcription Enhancers Genic enhancers Flanking Active TSS Transcr. at gene 5' and 3'	Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:122 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:66888600-66922600	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
2	chr11:66889000-66920400	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
3	chr11:66889800-66923400	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
4	chr11:66890000-66912800	Weak transcription	Psoas Muscle	Psoas
5	chr11:66890200-66920000	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
6	chr11:66890800-66912600	Strong transcription	Primary mononuclear cells fromperipheralblood	Blood
7	chr11:66890800-66923000	Strong transcription	Fetal Thymus	thymus
8	chr11:66892600-66914000	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
9	chr11:66892800-66911800	Strong transcription	Primary Natural Killer cells fromperipheralblood	blood
10	chr11:66892800-66912600	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
11	chr11:66892800-66913000	Strong transcription	Primary hematopoietic stem cells short term culture	blood
12	chr11:66893200-66923000	Strong transcription	Monocytes-CD14+_RO01746	blood
13	chr11:66893200-66923400	Strong transcription	Primary monocytes fromperipheralblood	blood
14	chr11:66894200-66911400	Strong transcription	Adipose Nuclei	Adipose
15	chr11:66894400-66922400	Strong transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
16	chr11:66895200-66915800	Strong transcription	Primary neutrophils fromperipheralblood	blood
17	chr11:66895600-66911000	Strong transcription	Primary T cells fromperipheralblood	blood
18	chr11:66895600-66922000	Strong transcription	Primary T helper cells fromperipheralblood	blood
19	chr11:66895800-66911600	Strong transcription	HUES64 Cell Line	embryonic stem cell
20	chr11:66896600-66912800	Strong transcription	Primary T regulatory cells fromperipheralblood	blood
21	chr11:66897200-66916000	Strong transcription	Breast Myoepithelial Primary Cells	Breast
22	chr11:66898200-66911800	Strong transcription	Placenta	Placenta
23	chr11:66898200-66913000	Strong transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
24	chr11:66898400-66915600	Strong transcription	Fetal Intestine Large	intestine
25	chr11:66899200-66918400	Weak transcription	Small Intestine	intestine
26	chr11:66899400-66912600	Strong transcription	Rectal Mucosa Donor 29	rectum
27	chr11:66899400-66913200	Strong transcription	Duodenum Mucosa	Duodenum
28	chr11:66900400-66921200	Strong transcription	Primary B cells from peripheral blood	blood
29	chr11:66900400-66933800	Weak transcription	Esophagus	oesophagus
30	chr11:66901400-66911600	Strong transcription	Brain Cingulate Gyrus	brain
31	chr11:66902400-66920600	Weak transcription	Ovary	ovary
32	chr11:66902600-66910600	Weak transcription	Placenta Amnion	Placenta Amnion
33	chr11:66903000-66934000	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
34	chr11:66903400-66925600	Weak transcription	iPS-15b Cell Line	embryonic stem cell
35	chr11:66904000-66911200	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
36	chr11:66904000-66918000	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
37	chr11:66904200-66910600	Weak transcription	Brain Substantia Nigra	brain
38	chr11:66904200-66919800	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
39	chr11:66904400-66918000	Weak transcription	Right Ventricle	heart
40	chr11:66904400-66918200	Weak transcription	Brain Angular Gyrus	brain
41	chr11:66904400-66922800	Weak transcription	Colonic Mucosa	Colon
42	chr11:66904400-66934000	Weak transcription	K562	blood
43	chr11:66904600-66918000	Weak transcription	Fetal Brain Male	brain
44	chr11:66904600-66918200	Weak transcription	ES-I3 Cell Line	embryonic stem cell
45	chr11:66904600-66928400	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
46	chr11:66904800-66915400	Strong transcription	Sigmoid Colon	Sigmoid Colon
47	chr11:66904800-66917400	Weak transcription	iPS-18 Cell Line	embryonic stem cell
48	chr11:66904800-66917400	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
49	chr11:66904800-66918200	Weak transcription	HSMMtube	muscle
50	chr11:66904800-66927200	Weak transcription	Skeletal Muscle Female	skeletal muscle

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