Variant report

Variant	rs549123910
Chromosome Location	chr6:15676517-15676518
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr6:15672759..15682190-chr6:16128127..16132961,11	K562	blood:
2	chr6:15672874..15675125-chr6:15675945..15678266,2	K562	blood:

Variant related genes	Relation type
ENSG00000007944	Chromatin interaction

Extended variants
information (count: 6 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv428136	chr6:15595640-15781241	Enhancers Genic enhancers Weak transcription Active TSS Strong transcription Bivalent Enhancer ZNF genes & repeats Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
2	esv2755670	chr6:15624762-15736008	Flanking Active TSS Strong transcription Active TSS ZNF genes & repeats Enhancers Bivalent/Poised TSS Weak transcription Flanking Bivalent TSS/Enh Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
3	esv2607475	chr6:15664805-15717086	Active TSS Bivalent Enhancer Enhancers Flanking Active TSS Weak transcription ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
4	esv2757157	chr6:15668867-15725478	Active TSS Bivalent Enhancer Enhancers Flanking Active TSS Weak transcription ZNF genes & repeats Bivalent/Poised TSS	Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
5	esv2759408	chr6:15668867-15725478	Flanking Active TSS Active TSS Enhancers Weak transcription ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS	Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
6	esv3692888	chr6:15675641-15694811	Flanking Active TSS Enhancers Weak transcription Bivalent Enhancer Active TSS Bivalent/Poised TSS	Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:28 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:15672800-15677200	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
2	chr6:15673200-15677400	Enhancers	Foreskin Melanocyte Primary Cells skin01	Skin
3	chr6:15674000-15677000	Enhancers	Primary monocytes fromperipheralblood	blood
4	chr6:15674400-15676600	Enhancers	Psoas Muscle	Psoas
5	chr6:15674600-15676600	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
6	chr6:15674800-15676600	Enhancers	Primary hematopoietic stem cells	blood
7	chr6:15674800-15676600	Enhancers	Brain Anterior Caudate	brain
8	chr6:15674800-15676800	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
9	chr6:15675000-15676600	Enhancers	Fetal Intestine Small	intestine
10	chr6:15675000-15676600	Enhancers	Sigmoid Colon	Sigmoid Colon
11	chr6:15675200-15676600	Enhancers	Brain Hippocampus Middle	brain
12	chr6:15675200-15676600	Enhancers	Duodenum Mucosa	Duodenum
13	chr6:15675200-15676600	Enhancers	Rectal Mucosa Donor 31	rectum
14	chr6:15675200-15676600	Enhancers	Skeletal Muscle Male	skeletal muscle
15	chr6:15675200-15676600	Enhancers	Spleen	Spleen
16	chr6:15675400-15676600	Enhancers	Brain Cingulate Gyrus	brain
17	chr6:15675400-15676600	Enhancers	Fetal Intestine Large	intestine
18	chr6:15675600-15676600	Enhancers	Adipose Nuclei	Adipose
19	chr6:15675600-15676600	Enhancers	Skeletal Muscle Female	skeletal muscle
20	chr6:15675600-15676800	Enhancers	Brain Angular Gyrus	brain
21	chr6:15675800-15678200	Weak transcription	K562	blood
22	chr6:15675800-15678600	Weak transcription	iPS-20b Cell Line	embryonic stem cell
23	chr6:15675800-15685000	Weak transcription	HUES48 Cell Line	embryonic stem cell
24	chr6:15675800-15685000	Weak transcription	iPS-18 Cell Line	embryonic stem cell
25	chr6:15676200-15676600	Enhancers	Brain Inferior Temporal Lobe	brain
26	chr6:15676200-15676600	Flanking Active TSS	Brain Substantia Nigra	brain
27	chr6:15676400-15676800	Enhancers	Monocytes-CD14+_RO01746	blood
28	chr6:15676400-15678600	Weak transcription	H9 Cell Line	embryonic stem cell

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