Variant report
| Variant | rs549131132 |
|---|---|
| Chromosome Location | chr3:22943338-22943339 |
| allele | -/AAG |
| Outlinks | Ensembl UCSC |
- TF binding region (count:35)
- CpG islands (count:0)
- Chromatin interactive region (count:0)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
(count:35 , 50 per page) page:
1
| No. | Transcrition factor | Chromosome Location | Cell Line | Cell type | Cell Stage | Matched TF binding sites |
|---|---|---|---|---|---|---|
| 1 | CTCF | chr3:22943260-22943410 | HPAF | blood vessel: | n/a | n/a |
| 2 | CTCF | chr3:22943240-22943390 | HEEpiC | esophagus: | n/a | n/a |
| 3 | CTCF | chr3:22943220-22943370 | HMEC | breast: | n/a | n/a |
| 4 | CTCF | chr3:22943240-22943390 | GM12875 | blood: | n/a | n/a |
| 5 | CTCF | chr3:22943260-22943410 | GM12864 | blood: | n/a | n/a |
| 6 | CTCF | chr3:22943300-22943450 | NHEK | skin: | n/a | n/a |
| 7 | CHD2 | chr3:22943258-22943420 | H1-hESC | embryonic stem cell: | n/a | n/a |
| 8 | CTCF | chr3:22943240-22943390 | Hela-S3 | cervix: | n/a | n/a |
| 9 | CTCF | chr3:22943264-22943503 | H1-hESC | embryonic stem cell: | n/a | n/a |
| 10 | KAP1 | chr3:22943079-22943578 | HEK293 | kidney: | n/a | n/a |
| 11 | CTCF | chr3:22943280-22943430 | AoAF | blood vessel: | n/a | n/a |
| 12 | CTCF | chr3:22943240-22943390 | NHDF-neo | bronchial: | n/a | n/a |
| 13 | CTCF | chr3:22943200-22943350 | HPF | lung: | n/a | n/a |
| 14 | CTCF | chr3:22943220-22943370 | GM12874 | blood: | n/a | n/a |
| 15 | SETDB1 | chr3:22943128-22943627 | U2OS | brain: | n/a | n/a |
| 16 | CTCF | chr3:22943220-22943370 | GM12878 | blood: | n/a | n/a |
| 17 | CTCF | chr3:22943260-22943410 | GM12872 | blood: | n/a | n/a |
| 18 | CTCF | chr3:22943280-22943430 | GM12873 | blood: | n/a | n/a |
| 19 | CTCF | chr3:22943320-22943470 | RPTEC | kidney: | n/a | n/a |
| 20 | CTCF | chr3:22943220-22943370 | HPF | lung: | n/a | n/a |
| 21 | CTCF | chr3:22943300-22943450 | MCF-7 | breast: | n/a | n/a |
| 22 | CTCF | chr3:22943260-22943410 | K562 | blood: | n/a | n/a |
| 23 | CTCF | chr3:22943240-22943390 | GM12873 | blood: | n/a | n/a |
| 24 | CTCF | chr3:22943200-22943350 | NHEK | skin: | n/a | n/a |
| 25 | ZNF143 | chr3:22943248-22943528 | H1-hESC | embryonic stem cell: | n/a | n/a |
| 26 | CTCF | chr3:22943280-22943430 | A549 | lung: | n/a | n/a |
| 27 | CTCF | chr3:22943280-22943430 | GM12864 | blood: | n/a | n/a |
| 28 | CTCF | chr3:22943220-22943370 | HCT-116 | colon: | n/a | n/a |
| 29 | CTCF | chr3:22943320-22943470 | GM12878 | blood: | n/a | n/a |
| 30 | CTCF | chr3:22943240-22943390 | RPTEC | kidney: | n/a | n/a |
| 31 | CTCF | chr3:22943240-22943390 | HMF | breast: | n/a | n/a |
| 32 | CTCF | chr3:22943300-22943450 | HCFaa | heart: | n/a | n/a |
| 33 | CTCF | chr3:22943280-22943430 | HRE | kidney: | n/a | n/a |
| 34 | CTCF | chr3:22943240-22943390 | GM06990 | blood: | n/a | n/a |
| 35 | CTCF | chr3:22943240-22943390 | GM12866 | blood: | n/a | n/a |
| No data |
| No data |
| No data |
| No data |
| No data |
| Variant related genes | Relation type |
|---|---|
| RANP7 | TF binding region |
Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv1014828 | chr3:22554271-23033498 | Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Active TSS | TF binding regionCpG islandChromatin interactive regionlncRNA | 8 gene(s) | inside rSNPs | diseases |
| 2 | nsv1008306 | chr3:22762892-23026548 | Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Bivalent Enhancer | TF binding regionCpG islandChromatin interactive regionlncRNA | 7 gene(s) | inside rSNPs | diseases |
| 3 | esv16397 | chr3:22941523-22946888 | Enhancers Weak transcription | TF binding regionChromatin interactive regionlncRNA | 1 gene(s) | inside rSNPs | n/a |
| No data |
Chromatin state (count:0 , 50 per page) page:
| No data |
