Variant report

Variant	rs549137146
Chromosome Location	chr1:91848018-91848019
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr1:91845229..91846792-chr1:91847431..91848991,2	K562	blood:
2	chr1:91847414..91849812-chr1:91869896..91871818,2	K562	blood:
3	chr1:91841748..91844457-chr1:91845517..91848039,2	K562	blood:

Variant related genes	Relation type
ENSG00000162669	Chromatin interaction

Extended variants
information (count: 6 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv949516	chr1:91644418-92109261	Weak transcription Enhancers Active TSS Flanking Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Strong transcription Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	28 gene(s)	inside rSNPs	diseases
2	esv1800676	chr1:91722083-91854389	Enhancers Weak transcription ZNF genes & repeats Flanking Bivalent TSS/Enh Active TSS Strong transcription Bivalent Enhancer Flanking Active TSS Genic enhancers Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	14 gene(s)	inside rSNPs	diseases
3	esv1796351	chr1:91722083-91872374	Active TSS Strong transcription Bivalent Enhancer Flanking Active TSS Flanking Bivalent TSS/Enh Enhancers ZNF genes & repeats Weak transcription Bivalent/Poised TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	16 gene(s)	inside rSNPs	diseases
4	nsv871685	chr1:91774458-91849219	Strong transcription ZNF genes & repeats Weak transcription Enhancers Active TSS Genic enhancers Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
5	nsv546806	chr1:91780408-91875505	Flanking Active TSS Flanking Bivalent TSS/Enh Weak transcription Enhancers ZNF genes & repeats Active TSS Strong transcription Bivalent/Poised TSS Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	15 gene(s)	inside rSNPs	diseases
6	esv3444927	chr1:91847937-91848163	Weak transcription Enhancers	Chromatin interactive region	1 gene(s)	inside rSNPs	n/a

No data

Chromatin state (count:20 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:91822800-91849000	Weak transcription	Rectal Smooth Muscle	rectum
2	chr1:91824800-91852600	Weak transcription	Skeletal Muscle Female	skeletal muscle
3	chr1:91825000-91852600	Weak transcription	Stomach Smooth Muscle	stomach
4	chr1:91829800-91852600	Weak transcription	Brain Germinal Matrix	brain
5	chr1:91832000-91852600	Weak transcription	Fetal Heart	heart
6	chr1:91833000-91852600	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
7	chr1:91833000-91852600	Weak transcription	Fetal Stomach	stomach
8	chr1:91836800-91852600	Weak transcription	iPS-18 Cell Line	embryonic stem cell
9	chr1:91839000-91852600	Weak transcription	Fetal Intestine Large	intestine
10	chr1:91840400-91852600	Weak transcription	Fetal Kidney	kidney
11	chr1:91840600-91852600	Weak transcription	Ovary	ovary
12	chr1:91840800-91852600	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
13	chr1:91840800-91852600	Weak transcription	Fetal Brain Male	brain
14	chr1:91840800-91852600	Weak transcription	Fetal Lung	lung
15	chr1:91841400-91852600	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
16	chr1:91843400-91852600	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
17	chr1:91847400-91852600	Weak transcription	Pancreatic Islets	Pancreatic Islet
18	chr1:91847800-91852600	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
19	chr1:91848000-91852600	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
20	chr1:91848000-91852600	Weak transcription	K562	blood

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