Variant report

Variant	rs549150769
Chromosome Location	chr2:86962194-86962195
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 4 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv532724	chr2:86622295-87086407	Weak transcription Active TSS Genic enhancers Enhancers Flanking Active TSS Strong transcription Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	45 gene(s)	inside rSNPs	diseases
2	nsv10063	chr2:86940988-87084360	Weak transcription Genic enhancers Active TSS Bivalent/Poised TSS Enhancers Strong transcription Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh Flanking Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region miRNA target site	8 gene(s)	inside rSNPs	diseases
3	nsv1002420	chr2:86948835-87172715	Weak transcription Active TSS Enhancers Bivalent/Poised TSS Bivalent Enhancer Strong transcription Flanking Active TSS Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	13 gene(s)	inside rSNPs	diseases
4	nsv874472	chr2:86961252-87071474	Weak transcription Genic enhancers Strong transcription Flanking Bivalent TSS/Enh Active TSS Enhancers Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region miRNA target site	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:13 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:86948800-86972600	Weak transcription	Primary T helper naive cells from peripheral blood	blood
2	chr2:86949000-86970200	Weak transcription	Primary T helper cells PMA-I stimulated	--
3	chr2:86949000-86970200	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
4	chr2:86949000-86970200	Weak transcription	Fetal Intestine Small	intestine
5	chr2:86949000-86979600	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
6	chr2:86951400-86970200	Weak transcription	Primary T helper cells fromperipheralblood	blood
7	chr2:86956400-86963400	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
8	chr2:86956400-86970400	Weak transcription	Primary T cells fromperipheralblood	blood
9	chr2:86956800-86971200	Weak transcription	Skeletal Muscle Female	skeletal muscle
10	chr2:86959600-86969800	Weak transcription	Monocytes-CD14+_RO01746	blood
11	chr2:86961600-86971200	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
12	chr2:86962000-86962200	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
13	chr2:86962000-86962200	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

what's new

Quick links