Variant report

Variant	rs549201064
Chromosome Location	chr11:35001180-35001181
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr11:34989938..34992204-chr11:35000945..35002458,2	K562	blood:

Extended variants
information (count: 4 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv832119	chr11:34815528-35009370	Strong transcription Enhancers Active TSS Weak transcription ZNF genes & repeats Genic enhancers Flanking Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	13 gene(s)	inside rSNPs	diseases
2	nsv1045837	chr11:34893992-35395190	Weak transcription Flanking Active TSS Enhancers ZNF genes & repeats Active TSS Strong transcription Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Genic enhancers Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	44 gene(s)	inside rSNPs	diseases
3	nsv430371	chr11:34975067-35111292	Enhancers Weak transcription Strong transcription Genic enhancers Flanking Active TSS Active TSS ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	5 gene(s)	inside rSNPs	diseases
4	esv1826391	chr11:35000983-35098193	Enhancers Flanking Active TSS Strong transcription Weak transcription Bivalent Enhancer Genic enhancers ZNF genes & repeats Active TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:121 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:34948000-35006800	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
2	chr11:34952200-35010800	Weak transcription	Small Intestine	intestine
3	chr11:34959000-35019600	Weak transcription	Primary T helper naive cells from peripheral blood	blood
4	chr11:34962000-35008200	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
5	chr11:34962800-35006600	Weak transcription	Esophagus	oesophagus
6	chr11:34965400-35008200	Weak transcription	Gastric	stomach
7	chr11:34975400-35006800	Weak transcription	Primary T killer memory cells from peripheral blood	blood
8	chr11:34976600-35018400	Weak transcription	Spleen	Spleen
9	chr11:34977800-35009800	Weak transcription	iPS-15b Cell Line	embryonic stem cell
10	chr11:34981600-35006000	Weak transcription	Brain Anterior Caudate	brain
11	chr11:34982200-35014200	Weak transcription	Fetal Brain Male	brain
12	chr11:34983400-35006800	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
13	chr11:34983400-35008200	Weak transcription	Aorta	Aorta
14	chr11:34983600-35018200	Weak transcription	H9 Cell Line	embryonic stem cell
15	chr11:34985200-35026600	Weak transcription	Colonic Mucosa	Colon
16	chr11:34987000-35008200	Weak transcription	Pancreas	Pancrea
17	chr11:34987000-35017000	Weak transcription	K562	blood
18	chr11:34988800-35006200	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
19	chr11:34991000-35020800	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
20	chr11:34991800-35005600	Weak transcription	Placenta	Placenta
21	chr11:34991800-35006600	Weak transcription	Fetal Intestine Small	intestine
22	chr11:34992200-35002600	Weak transcription	H1 Cell Line	embryonic stem cell
23	chr11:34992400-35002200	Weak transcription	Fetal Thymus	thymus
24	chr11:34992400-35004800	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
25	chr11:34992400-35009400	Weak transcription	GM12878-XiMat	blood
26	chr11:34992400-35016600	Weak transcription	Fetal Heart	heart
27	chr11:34992600-35006200	Weak transcription	Duodenum Mucosa	Duodenum
28	chr11:34992600-35006200	Weak transcription	Fetal Brain Female	brain
29	chr11:34993000-35002000	Weak transcription	Brain Germinal Matrix	brain
30	chr11:34994200-35006000	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
31	chr11:34997600-35019600	Weak transcription	Fetal Kidney	kidney
32	chr11:34997800-35006000	Weak transcription	Fetal Muscle Trunk	muscle
33	chr11:34998600-35006800	Weak transcription	Primary neutrophils fromperipheralblood	blood
34	chr11:34999000-35005800	Weak transcription	Cortex derived primary cultured neurospheres	brain
35	chr11:34999000-35006000	Weak transcription	HUES6 Cell Line	embryonic stem cell
36	chr11:34999000-35018600	Weak transcription	iPS-18 Cell Line	embryonic stem cell
37	chr11:34999600-35001200	Strong transcription	Breast Myoepithelial Primary Cells	Breast
38	chr11:34999600-35001200	Enhancers	NHEK	skin
39	chr11:35000000-35001600	Strong transcription	Primary monocytes fromperipheralblood	blood
40	chr11:35000000-35002800	Strong transcription	Ganglion Eminence derived primary cultured neurospheres	brain
41	chr11:35000000-35003000	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
42	chr11:35000200-35001200	Strong transcription	Primary T cells fromperipheralblood	blood
43	chr11:35000200-35008400	Weak transcription	Pancreatic Islets	Pancreatic Islet
44	chr11:35000400-35001200	Strong transcription	HepG2	liver
45	chr11:35000400-35001400	Genic enhancers	Hela-S3	cervix
46	chr11:35000400-35002000	Weak transcription	Primary hematopoietic stem cells short term culture	blood
47	chr11:35000400-35002400	Strong transcription	HUES64 Cell Line	embryonic stem cell
48	chr11:35000400-35002800	Strong transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
49	chr11:35000400-35006000	Weak transcription	iPS-20b Cell Line	embryonic stem cell
50	chr11:35000400-35006000	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow

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