Variant report

Variant	rs549203437
Chromosome Location	chr6:131374964-131374965
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr6:131370012..131372653-chr6:131373371..131376105,2	K562	blood:

Extended variants
information (count: 3 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1032955	chr6:131298803-131818502	Active TSS Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Bivalent/Poised TSS Genic enhancers Strong transcription Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	14 gene(s)	inside rSNPs	diseases
2	nsv538443	chr6:131298803-131818502	Active TSS Weak transcription ZNF genes & repeats Enhancers Strong transcription Flanking Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS Genic enhancers Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	14 gene(s)	inside rSNPs	diseases
3	esv3391837	chr6:131374715-131375870	Weak transcription ZNF genes & repeats Enhancers Strong transcription	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:51 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:131346000-131375000	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
2	chr6:131351400-131375000	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
3	chr6:131356600-131375000	Weak transcription	Brain Angular Gyrus	brain
4	chr6:131360800-131375000	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
5	chr6:131368200-131375200	Weak transcription	ES-I3 Cell Line	embryonic stem cell
6	chr6:131371000-131375000	Weak transcription	Brain Substantia Nigra	brain
7	chr6:131371800-131375000	Weak transcription	Colon Smooth Muscle	Colon
8	chr6:131372200-131375000	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
9	chr6:131373400-131381400	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
10	chr6:131373600-131376800	ZNF genes & repeats	NHEK	skin
11	chr6:131373800-131377400	ZNF genes & repeats	Fetal Muscle Leg	muscle
12	chr6:131374000-131377600	ZNF genes & repeats	IMR90 fetal lung fibroblasts Cell Line	lung
13	chr6:131374200-131376400	ZNF genes & repeats	Fetal Stomach	stomach
14	chr6:131374400-131375000	Enhancers	HMEC	breast
15	chr6:131374400-131378200	ZNF genes & repeats	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
16	chr6:131374600-131375400	ZNF genes & repeats	Left Ventricle	heart
17	chr6:131374600-131375400	ZNF genes & repeats	NHDF-Ad	bronchial
18	chr6:131374600-131375800	ZNF genes & repeats	Foreskin Keratinocyte Primary Cells skin02	Skin
19	chr6:131374600-131376000	ZNF genes & repeats	HUVEC	blood vessel
20	chr6:131374600-131376400	ZNF genes & repeats	Muscle Satellite Cultured Cells	--
21	chr6:131374600-131376400	ZNF genes & repeats	Brain Hippocampus Middle	brain
22	chr6:131374600-131376400	ZNF genes & repeats	Fetal Lung	lung
23	chr6:131374600-131376600	ZNF genes & repeats	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
24	chr6:131374600-131376600	ZNF genes & repeats	Brain Anterior Caudate	brain
25	chr6:131374600-131376800	ZNF genes & repeats	Fetal Muscle Trunk	muscle
26	chr6:131374600-131376800	ZNF genes & repeats	NHLF	lung
27	chr6:131374600-131377000	ZNF genes & repeats	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
28	chr6:131374600-131377200	ZNF genes & repeats	Fetal Intestine Small	intestine
29	chr6:131374600-131377400	ZNF genes & repeats	Fetal Intestine Large	intestine
30	chr6:131374600-131378000	ZNF genes & repeats	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
31	chr6:131374600-131378000	ZNF genes & repeats	A549	lung
32	chr6:131374800-131375200	ZNF genes & repeats	Sigmoid Colon	Sigmoid Colon
33	chr6:131374800-131375200	ZNF genes & repeats	HSMM	muscle
34	chr6:131374800-131375400	ZNF genes & repeats	Brain Cingulate Gyrus	brain
35	chr6:131374800-131375400	ZNF genes & repeats	Brain Inferior Temporal Lobe	brain
36	chr6:131374800-131375600	ZNF genes & repeats	Ovary	ovary
37	chr6:131374800-131375800	ZNF genes & repeats	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
38	chr6:131374800-131375800	ZNF genes & repeats	Adipose Nuclei	Adipose
39	chr6:131374800-131376000	ZNF genes & repeats	Rectal Mucosa Donor 29	rectum
40	chr6:131374800-131376200	ZNF genes & repeats	Osteobl	bone
41	chr6:131374800-131376400	ZNF genes & repeats	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
42	chr6:131374800-131376400	ZNF genes & repeats	Ganglion Eminence derived primary cultured neurospheres	brain
43	chr6:131374800-131376600	ZNF genes & repeats	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
44	chr6:131374800-131376600	ZNF genes & repeats	Monocytes-CD14+_RO01746	blood
45	chr6:131374800-131377000	ZNF genes & repeats	Duodenum Mucosa	Duodenum
46	chr6:131374800-131377200	ZNF genes & repeats	H1 Cell Line	embryonic stem cell
47	chr6:131374800-131377200	ZNF genes & repeats	Duodenum Smooth Muscle	Duodenum
48	chr6:131374800-131377600	ZNF genes & repeats	HUES6 Cell Line	embryonic stem cell
49	chr6:131374800-131378000	ZNF genes & repeats	Dnd41	blood
50	chr6:131374800-131378000	ZNF genes & repeats	HepG2	liver

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links