Variant report

Variant	rs549240541
Chromosome Location	chr14:56740798-56740799
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 7 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:7 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv533129	chr14:56568535-56819234	Enhancers Weak transcription Strong transcription Flanking Active TSS Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
2	esv1844788	chr14:56594420-56771207	Weak transcription Enhancers Strong transcription ZNF genes & repeats Flanking Active TSS Genic enhancers Bivalent Enhancer Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
3	nsv1044886	chr14:56689682-56834648	Weak transcription Enhancers Strong transcription ZNF genes & repeats Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
4	nsv542104	chr14:56689682-56834648	Weak transcription Strong transcription Enhancers Flanking Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Active TSS Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
5	nsv976835	chr14:56740554-56746606	Weak transcription Enhancers Strong transcription Flanking Active TSS ZNF genes & repeats Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
6	nsv901978	chr14:56740554-56799997	ZNF genes & repeats Weak transcription Enhancers Strong transcription Active TSS Flanking Active TSS Genic enhancers Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
7	nsv901979	chr14:56740554-56802610	Weak transcription Strong transcription Enhancers Genic enhancers ZNF genes & repeats Active TSS Flanking Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:46 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:56717800-56749600	Weak transcription	Fetal Thymus	thymus
2	chr14:56717800-56765400	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
3	chr14:56718400-56755800	Weak transcription	Ovary	ovary
4	chr14:56718800-56751400	Weak transcription	Primary B cells from cord blood	blood
5	chr14:56724600-56755200	Weak transcription	Primary hematopoietic stem cells	blood
6	chr14:56725400-56746800	Weak transcription	Dnd41	blood
7	chr14:56725600-56742200	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
8	chr14:56731200-56747800	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
9	chr14:56731400-56748000	Weak transcription	Primary neutrophils fromperipheralblood	blood
10	chr14:56733200-56744000	Weak transcription	Gastric	stomach
11	chr14:56733800-56746400	Weak transcription	Primary monocytes fromperipheralblood	blood
12	chr14:56734000-56750000	Weak transcription	Breast Myoepithelial Primary Cells	Breast
13	chr14:56734800-56740800	Weak transcription	Esophagus	oesophagus
14	chr14:56735200-56755200	Weak transcription	Adipose Nuclei	Adipose
15	chr14:56735400-56741200	Weak transcription	Rectal Mucosa Donor 29	rectum
16	chr14:56735800-56741800	Weak transcription	Fetal Intestine Small	intestine
17	chr14:56735800-56750200	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
18	chr14:56735800-56751800	Weak transcription	Primary T cells from cord blood	blood
19	chr14:56735800-56765800	Weak transcription	NHLF	lung
20	chr14:56737400-56755800	Weak transcription	Rectal Smooth Muscle	rectum
21	chr14:56738200-56741800	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
22	chr14:56738200-56741800	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
23	chr14:56738400-56741400	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
24	chr14:56738400-56741600	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
25	chr14:56738400-56741800	Enhancers	NHDF-Ad	bronchial
26	chr14:56738400-56742000	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
27	chr14:56738600-56740800	Enhancers	HSMMtube	muscle
28	chr14:56738800-56741000	Enhancers	HUVEC	blood vessel
29	chr14:56738800-56755800	Weak transcription	Lung	lung
30	chr14:56738800-56766000	Weak transcription	Brain Angular Gyrus	brain
31	chr14:56738800-56775600	Weak transcription	Sigmoid Colon	Sigmoid Colon
32	chr14:56739000-56746800	Weak transcription	Monocytes-CD14+_RO01746	blood
33	chr14:56739200-56740800	Weak transcription	Brain Cingulate Gyrus	brain
34	chr14:56739200-56741800	Enhancers	Muscle Satellite Cultured Cells	--
35	chr14:56739200-56741800	Weak transcription	Pancreas	Pancrea
36	chr14:56739200-56742000	Enhancers	Osteobl	bone
37	chr14:56739400-56743000	Weak transcription	Thymus	Thymus
38	chr14:56740000-56740800	Enhancers	Stomach Smooth Muscle	stomach
39	chr14:56740000-56756000	Weak transcription	Brain Hippocampus Middle	brain
40	chr14:56740000-56757000	Weak transcription	Left Ventricle	heart
41	chr14:56740000-56764800	Weak transcription	Right Ventricle	heart
42	chr14:56740600-56740800	Flanking Active TSS	Aorta	Aorta
43	chr14:56740600-56740800	Enhancers	Pancreatic Islets	Pancreatic Islet
44	chr14:56740600-56741000	Enhancers	Fetal Stomach	stomach
45	chr14:56740600-56741400	Enhancers	Colon Smooth Muscle	Colon
46	chr14:56740600-56741600	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived

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