Variant report

Variant	rs549261626
Chromosome Location	chr4:86787526-86787527
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 2 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv830000	chr4:86745341-86909059	Enhancers Flanking Active TSS Weak transcription Active TSS Strong transcription ZNF genes & repeats Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
2	nsv879519	chr4:86786204-86871282	Flanking Active TSS Weak transcription Active TSS Enhancers Bivalent Enhancer Genic enhancers Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:40 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:86749400-86787600	Weak transcription	Pancreas	Pancrea
2	chr4:86750000-86809200	Weak transcription	Fetal Muscle Trunk	muscle
3	chr4:86776000-86790400	Weak transcription	Right Atrium	heart
4	chr4:86779800-86800200	Weak transcription	Primary B cells from cord blood	blood
5	chr4:86780400-86787600	Weak transcription	Colon Smooth Muscle	Colon
6	chr4:86780400-86790800	Weak transcription	Gastric	stomach
7	chr4:86781600-86787600	Weak transcription	Skeletal Muscle Female	skeletal muscle
8	chr4:86781800-86787600	Weak transcription	NHLF	lung
9	chr4:86781800-86787800	Weak transcription	Skeletal Muscle Male	skeletal muscle
10	chr4:86781800-86789000	Weak transcription	Small Intestine	intestine
11	chr4:86781800-86790400	Weak transcription	NH-A	brain
12	chr4:86782400-86788400	Weak transcription	Stomach Smooth Muscle	stomach
13	chr4:86782600-86787600	Weak transcription	Rectal Smooth Muscle	rectum
14	chr4:86782800-86791600	Weak transcription	Duodenum Mucosa	Duodenum
15	chr4:86783400-86787600	Weak transcription	Duodenum Smooth Muscle	Duodenum
16	chr4:86783400-86787600	Weak transcription	Fetal Stomach	stomach
17	chr4:86783600-86788400	Weak transcription	Pancreatic Islets	Pancreatic Islet
18	chr4:86784000-86790200	Weak transcription	HUES6 Cell Line	embryonic stem cell
19	chr4:86784200-86789400	Weak transcription	ES-I3 Cell Line	embryonic stem cell
20	chr4:86785800-86787600	Weak transcription	Stomach Mucosa	stomach
21	chr4:86786000-86787600	Weak transcription	Primary B cells from peripheral blood	blood
22	chr4:86786600-86787600	Weak transcription	Liver	Liver
23	chr4:86786800-86787800	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
24	chr4:86787000-86787600	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
25	chr4:86787000-86788000	Enhancers	Breast Myoepithelial Primary Cells	Breast
26	chr4:86787200-86788200	Flanking Active TSS	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
27	chr4:86787200-86788400	Enhancers	HSMMtube	muscle
28	chr4:86787200-86788600	Enhancers	Fetal Kidney	kidney
29	chr4:86787200-86789400	Enhancers	Muscle Satellite Cultured Cells	--
30	chr4:86787400-86787600	Enhancers	Aorta	Aorta
31	chr4:86787400-86787800	Genic enhancers	HUVEC	blood vessel
32	chr4:86787400-86788000	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
33	chr4:86787400-86788000	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
34	chr4:86787400-86788000	Enhancers	HSMM	muscle
35	chr4:86787400-86788000	Flanking Active TSS	Osteobl	bone
36	chr4:86787400-86788200	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
37	chr4:86787400-86788200	Enhancers	Fetal Muscle Leg	muscle
38	chr4:86787400-86788200	Flanking Active TSS	NHDF-Ad	bronchial
39	chr4:86787400-86788400	Flanking Active TSS	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
40	chr4:86787400-86788600	Enhancers	iPS-20b Cell Line	embryonic stem cell

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