Variant report

Variant	rs549266026
Chromosome Location	chr11:93141125-93141126
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	MYC	chr11:93141071-93141355	MCF10A-Er-Src	breast:	n/a	chr11:93141162-93141171
2	ATF1	chr11:93140996-93141323	K562	blood:	n/a	n/a
3	CEBPB	chr11:93140894-93141393	K562	blood:	n/a	chr11:93141160-93141177 chr11:93141162-93141173 chr11:93141136-93141153 chr11:93141139-93141150
4	CEBPB	chr11:93141045-93141317	ECC-1	luminal epithelium:	n/a	chr11:93141160-93141177 chr11:93141162-93141173 chr11:93141136-93141153 chr11:93141139-93141150
5	FOS	chr11:93140989-93141337	MCF10A-Er-Src	breast:	n/a	n/a
6	CEBPB	chr11:93140968-93141348	K562	blood:	n/a	chr11:93141160-93141177 chr11:93141162-93141173 chr11:93141136-93141153 chr11:93141139-93141150
7	MAZ	chr11:93141071-93141359	K562	blood:	n/a	chr11:93141162-93141171
8	CEBPB	chr11:93140980-93141347	IMR90	lung:	n/a	chr11:93141160-93141177 chr11:93141162-93141173 chr11:93141136-93141153 chr11:93141139-93141150
9	JUN	chr11:93141080-93141306	HepG2	liver:	n/a	chr11:93141159-93141172
10	STAT3	chr11:93141069-93141321	MCF10A-Er-Src	breast:	n/a	n/a
11	FOS	chr11:93140976-93141333	MCF10A-Er-Src	breast:	n/a	n/a
12	JUND	chr11:93141002-93141332	HepG2	liver:	n/a	n/a
13	CEBPB	chr11:93140897-93141476	HCT-116	colon:	n/a	chr11:93141160-93141177 chr11:93141162-93141173 chr11:93141136-93141153 chr11:93141139-93141150
14	MYC	chr11:93141069-93141325	K562	blood:	n/a	chr11:93141162-93141171
15	EP300	chr11:93140926-93141303	K562	blood:	n/a	chr11:93141159-93141173 chr11:93141140-93141154
16	CEBPB	chr11:93140969-93141354	HepG2	liver:	n/a	chr11:93141160-93141177 chr11:93141162-93141173 chr11:93141136-93141153 chr11:93141139-93141150
17	CEBPB	chr11:93140982-93141344	A549	lung:	n/a	chr11:93141160-93141177 chr11:93141162-93141173 chr11:93141136-93141153 chr11:93141139-93141150
18	MAX	chr11:93141110-93141277	K562	blood:	n/a	chr11:93141162-93141171
19	EGR1	chr11:93141099-93141328	K562	blood:	n/a	chr11:93141235-93141248 chr11:93141234-93141249
20	STAT3	chr11:93141085-93141285	MCF10A-Er-Src	breast:	n/a	n/a
21	CEBPB	chr11:93140968-93141291	K562	blood:	n/a	chr11:93141160-93141177 chr11:93141162-93141173 chr11:93141136-93141153 chr11:93141139-93141150
22	CEBPB	chr11:93140958-93141353	Hela-S3	cervix:	n/a	chr11:93141160-93141177 chr11:93141162-93141173 chr11:93141136-93141153 chr11:93141139-93141150
23	FOS	chr11:93140982-93141346	MCF10A-Er-Src	breast:	n/a	n/a
24	E2F4	chr11:93141003-93141303	MCF10A-Er-Src	breast:	n/a	n/a
25	FOS	chr11:93140976-93141342	MCF10A-Er-Src	breast:	n/a	n/a
26	CEBPB	chr11:93141014-93141258	HepG2	liver:	n/a	chr11:93141160-93141177 chr11:93141162-93141173 chr11:93141136-93141153 chr11:93141139-93141150
27	CEBPB	chr11:93140940-93141345	HCT-116	colon:	n/a	chr11:93141160-93141177 chr11:93141162-93141173 chr11:93141136-93141153 chr11:93141139-93141150
28	JUND	chr11:93140982-93141348	K562	blood:	n/a	n/a
29	CEBPB	chr11:93140988-93141325	H1-hESC	embryonic stem cell:	n/a	chr11:93141160-93141177 chr11:93141162-93141173 chr11:93141136-93141153 chr11:93141139-93141150
30	CEBPB	chr11:93140924-93141389	A549	lung:	n/a	chr11:93141160-93141177 chr11:93141162-93141173 chr11:93141136-93141153 chr11:93141139-93141150
31	EP300	chr11:93141013-93141299	Hela-S3	cervix:	n/a	chr11:93141159-93141173 chr11:93141140-93141154
32	ATF3	chr11:93141005-93141334	K562	blood:	n/a	n/a
33	RCOR1	chr11:93140992-93141385	K562	blood:	n/a	n/a

Variant related genes	Relation type
ENSG00000221565	TF binding region
CCDC67	TF binding region

Extended variants
information (count: 6 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1039134	chr11:92790000-93219942	Strong transcription Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Genic enhancers Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	14 gene(s)	inside rSNPs	diseases
2	nsv898181	chr11:93072843-93662459	Flanking Active TSS Weak transcription Enhancers Strong transcription Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats Genic enhancers Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	119 gene(s)	inside rSNPs	diseases
3	nsv1035530	chr11:93114111-93148948	Enhancers Weak transcription ZNF genes & repeats Strong transcription Active TSS Flanking Active TSS	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
4	nsv555941	chr11:93129893-93181050	Flanking Active TSS Enhancers Weak transcription Active TSS ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
5	nsv439	chr11:93135936-93171682	Enhancers Weak transcription Active TSS ZNF genes & repeats Flanking Active TSS	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
6	nsv508649	chr11:93140899-93181092	Enhancers Flanking Active TSS Weak transcription Active TSS ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:93126800-93145200	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
2	chr11:93139000-93145200	Weak transcription	Pancreatic Islets	Pancreatic Islet
3	chr11:93140000-93144800	Weak transcription	Psoas Muscle	Psoas

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