Variant report

Variant	rs549306996
Chromosome Location	chr9:27025350-27025351
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	POLR2A	chr9:27025339-27025365	A549	lung:	n/a	n/a

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr9:27019266..27022191-chr9:27024943..27027796,2	K562	blood:

Variant related genes	Relation type
IFT74	TF binding region

Extended variants
information (count: 4 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv528614	chr9:26893662-27074233	Flanking Active TSS Strong transcription Weak transcription Enhancers Active TSS ZNF genes & repeats Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	17 gene(s)	inside rSNPs	diseases
2	nsv517269	chr9:26945976-27137242	Weak transcription Strong transcription Enhancers Active TSS Flanking Active TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	19 gene(s)	inside rSNPs	diseases
3	nsv892862	chr9:26956663-27190655	Enhancers ZNF genes & repeats Weak transcription Active TSS Flanking Active TSS Strong transcription Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	11 gene(s)	inside rSNPs	diseases
4	esv3427395	chr9:27025338-27040548	Weak transcription ZNF genes & repeats Strong transcription Enhancers Genic enhancers	TF binding region Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:112 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:26957200-27026600	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
2	chr9:26957200-27040000	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
3	chr9:26977800-27026000	Weak transcription	ES-I3 Cell Line	embryonic stem cell
4	chr9:26985200-27063800	Weak transcription	Primary T helper cells PMA-I stimulated	--
5	chr9:26991800-27058000	Weak transcription	NHDF-Ad	bronchial
6	chr9:27009800-27070000	Weak transcription	Psoas Muscle	Psoas
7	chr9:27011200-27037400	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
8	chr9:27011600-27026400	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
9	chr9:27012000-27048800	Weak transcription	HepG2	liver
10	chr9:27012600-27026200	Weak transcription	Placenta	Placenta
11	chr9:27013200-27025400	Weak transcription	HUVEC	blood vessel
12	chr9:27014000-27025800	Weak transcription	Stomach Mucosa	stomach
13	chr9:27014400-27060800	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
14	chr9:27014400-27068200	Weak transcription	Fetal Heart	heart
15	chr9:27016000-27025800	Weak transcription	GM12878-XiMat	blood
16	chr9:27016200-27025400	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
17	chr9:27017600-27025400	Weak transcription	Placenta Amnion	Placenta Amnion
18	chr9:27018400-27065200	Weak transcription	Osteobl	bone
19	chr9:27018600-27029400	Weak transcription	Primary monocytes fromperipheralblood	blood
20	chr9:27018800-27026200	Weak transcription	iPS-18 Cell Line	embryonic stem cell
21	chr9:27019200-27061800	Weak transcription	Skeletal Muscle Female	skeletal muscle
22	chr9:27020800-27026200	Strong transcription	Breast Myoepithelial Primary Cells	Breast
23	chr9:27022600-27036200	Weak transcription	NHEK	skin
24	chr9:27023400-27025400	Strong transcription	Primary hematopoietic stem cells short term culture	blood
25	chr9:27023400-27025400	Strong transcription	Fetal Lung	lung
26	chr9:27023600-27025400	Strong transcription	Fetal Adrenal Gland	Adrenal Gland
27	chr9:27023600-27025400	ZNF genes & repeats	Fetal Intestine Small	intestine
28	chr9:27023600-27025400	ZNF genes & repeats	Fetal Stomach	stomach
29	chr9:27023800-27025400	ZNF genes & repeats	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
30	chr9:27023800-27025400	Strong transcription	Primary B cells from cord blood	blood
31	chr9:27023800-27025400	Strong transcription	Brain Substantia Nigra	brain
32	chr9:27023800-27025400	Strong transcription	Fetal Muscle Trunk	muscle
33	chr9:27023800-27025400	Strong transcription	Fetal Muscle Leg	muscle
34	chr9:27023800-27025400	Strong transcription	Fetal Thymus	thymus
35	chr9:27023800-27025600	Strong transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
36	chr9:27023800-27025800	Strong transcription	Ganglion Eminence derived primary cultured neurospheres	brain
37	chr9:27024000-27025400	Strong transcription	Brain Anterior Caudate	brain
38	chr9:27024000-27025400	Strong transcription	Rectal Mucosa Donor 29	rectum
39	chr9:27024000-27026000	Strong transcription	HSMM	muscle
40	chr9:27024000-27026200	Strong transcription	A549	lung
41	chr9:27024000-27028400	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
42	chr9:27024200-27025400	Strong transcription	ES-UCSF4 Cell Line	embryonic stem cell
43	chr9:27024200-27025400	ZNF genes & repeats	Primary hematopoietic stem cells	blood
44	chr9:27024200-27026200	ZNF genes & repeats	Primary hematopoietic stem cells G-CSF-mobilized Male	--
45	chr9:27024400-27028600	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
46	chr9:27024400-27029400	Weak transcription	Esophagus	oesophagus
47	chr9:27024400-27047200	Weak transcription	Rectal Mucosa Donor 31	rectum
48	chr9:27024400-27053800	Weak transcription	Lung	lung
49	chr9:27024400-27082600	Weak transcription	Gastric	stomach
50	chr9:27024600-27026400	Weak transcription	HUES6 Cell Line	embryonic stem cell

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links