Variant report

Variant	rs549331225
Chromosome Location	chr7:150671520-150671521
allele	-/A
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:19)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:19 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr7:150646673..150650094-chr7:150670937..150674779,4	MCF-7	breast:
2	chr7:150627605..150628492-chr7:150671224..150672069,2	K562	blood:
3	chr12:65259282..65261612-chr7:150671119..150672990,2	MCF-7	breast:
4	chr7:150661035..150665420-chr7:150665668..150673641,9	MCF-7	breast:
5	chr7:150670653..150672364-chr7:150715220..150718108,2	MCF-7	breast:
6	chr7:150670110..150672033-chr7:150810426..150812934,2	MCF-7	breast:
7	chr7:150671455..150673565-chr7:150752052..150755338,3	MCF-7	breast:
8	chr7:150668944..150671861-chr7:150941507..150943455,2	MCF-7	breast:
9	chr7:150594719..150596784-chr7:150671045..150673400,2	MCF-7	breast:
10	chr7:150668903..150671561-chr7:150807024..150809833,2	MCF-7	breast:
11	chr7:150654869..150656816-chr7:150670691..150673405,2	MCF-7	breast:
12	chr7:150661173..150665225-chr7:150669426..150673358,7	MCF-7	breast:
13	chr7:150669264..150677850-chr7:150681612..150689209,13	MCF-7	breast:
14	chr7:150670321..150673113-chr7:150933266..150935781,2	MCF-7	breast:
15	chr7:150654976..150656696-chr7:150671274..150673215,2	MCF-7	breast:
16	chr7:150671324..150673603-chr7:150688182..150691343,3	MCF-7	breast:
17	chr19:55918635..55919319-chr7:150671393..150672297,2	HCT-116	colon:
18	chr7:150634464..150636964-chr7:150670317..150672404,2	MCF-7	breast:
19	chr7:150670508..150673387-chr7:150723224..150725668,3	MCF-7	breast:

No data

Variant related genes	Relation type
ENSG00000108106	Chromatin interaction
ENSG00000164889	Chromatin interaction
ENSG00000133612	Chromatin interaction
ENSG00000197150	Chromatin interaction
ENSG00000181652	Chromatin interaction
ENSG00000211517	Chromatin interaction
ENSG00000164885	Chromatin interaction
ENSG00000082014	Chromatin interaction
ENSG00000164867	Chromatin interaction

Extended variants
information (count: 19 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:19 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv608990	chr7:149961274-150707488	Active TSS Flanking Active TSS Enhancers Transcr. at gene 5' and 3' Bivalent Enhancer Genic enhancers Weak transcription ZNF genes & repeats Bivalent/Poised TSS Strong transcription Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	90 gene(s)	inside rSNPs	diseases
2	nsv1030109	chr7:150312916-150701010	Enhancers Active TSS Weak transcription Bivalent Enhancer ZNF genes & repeats Genic enhancers Flanking Bivalent TSS/Enh Flanking Active TSS Transcr. at gene 5' and 3' Strong transcription Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	34 gene(s)	inside rSNPs	diseases
3	esv1821419	chr7:150593315-150974269	Enhancers Strong transcription Weak transcription Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	128 gene(s)	inside rSNPs	diseases
4	nsv1022246	chr7:150619660-150779924	Bivalent Enhancer Flanking Bivalent TSS/Enh Flanking Active TSS Strong transcription Genic enhancers Enhancers Weak transcription Active TSS Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	52 gene(s)	inside rSNPs	diseases
5	nsv889463	chr7:150640285-150700946	Flanking Bivalent TSS/Enh Enhancers Flanking Active TSS Bivalent/Poised TSS Weak transcription Bivalent Enhancer Genic enhancers Active TSS Strong transcription Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region miRNA target site	20 gene(s)	inside rSNPs	diseases
6	nsv889464	chr7:150640285-150723467	Enhancers Active TSS Flanking Active TSS Weak transcription Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS Strong transcription Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	21 gene(s)	inside rSNPs	diseases
7	nsv889465	chr7:150640285-150800823	Flanking Active TSS Strong transcription Enhancers Flanking Bivalent TSS/Enh Genic enhancers Weak transcription Bivalent Enhancer Bivalent/Poised TSS Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	59 gene(s)	inside rSNPs	diseases
8	nsv889466	chr7:150642341-150687430	Enhancers Bivalent Enhancer Active TSS Genic enhancers Bivalent/Poised TSS Flanking Active TSS Weak transcription Flanking Bivalent TSS/Enh ZNF genes & repeats Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	19 gene(s)	inside rSNPs	diseases
9	nsv1017863	chr7:150643928-150779924	Enhancers Weak transcription Active TSS Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3' Genic enhancers Strong transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	52 gene(s)	inside rSNPs	diseases
10	nsv539197	chr7:150643928-150779924	Bivalent/Poised TSS Active TSS Strong transcription Flanking Bivalent TSS/Enh Enhancers Flanking Active TSS Genic enhancers Bivalent Enhancer Weak transcription Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	52 gene(s)	inside rSNPs	diseases
11	nsv1028645	chr7:150643928-150806534	Weak transcription Enhancers Flanking Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS Active TSS Strong transcription Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	59 gene(s)	inside rSNPs	diseases
12	nsv539198	chr7:150643928-150879259	Weak transcription Enhancers Flanking Bivalent TSS/Enh Genic enhancers Flanking Active TSS Bivalent Enhancer Strong transcription Active TSS ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	72 gene(s)	inside rSNPs	diseases
13	nsv889467	chr7:150645534-150723467	Weak transcription Flanking Bivalent TSS/Enh Enhancers Bivalent Enhancer Bivalent/Poised TSS Flanking Active TSS Active TSS Genic enhancers Strong transcription Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	21 gene(s)	inside rSNPs	diseases
14	nsv889468	chr7:150652419-150696111	Weak transcription Flanking Bivalent TSS/Enh Active TSS Enhancers Flanking Active TSS Bivalent Enhancer Genic enhancers Bivalent/Poised TSS ZNF genes & repeats Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	20 gene(s)	inside rSNPs	diseases
15	nsv889469	chr7:150657209-150747746	Flanking Bivalent TSS/Enh Enhancers Weak transcription Active TSS Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Strong transcription Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	26 gene(s)	inside rSNPs	diseases
16	nsv609002	chr7:150667210-150678080	Bivalent Enhancer Active TSS Enhancers Bivalent/Poised TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Weak transcription Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	16 gene(s)	inside rSNPs	diseases
17	nsv889470	chr7:150667210-150696111	Weak transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Enhancers Bivalent/Poised TSS Flanking Active TSS Active TSS ZNF genes & repeats Genic enhancers Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	18 gene(s)	inside rSNPs	diseases
18	esv3355513	chr7:150670544-150673392	Enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer Flanking Active TSS Active TSS Weak transcription Transcr. at gene 5' and 3' Genic enhancers	Chromatin interactive region	9 gene(s)	inside rSNPs	diseases
19	nsv8231	chr7:150671367-150681014	Enhancers Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent/Poised TSS Active TSS Bivalent Enhancer Weak transcription Transcr. at gene 5' and 3' Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	16 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:103 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:150664400-150673600	Enhancers	Fetal Lung	lung
2	chr7:150664600-150674000	Enhancers	Fetal Brain Male	brain
3	chr7:150665200-150671800	Genic enhancers	Fetal Stomach	stomach
4	chr7:150665400-150671800	Enhancers	Left Ventricle	heart
5	chr7:150667200-150672400	Enhancers	Fetal Heart	heart
6	chr7:150668200-150671800	Enhancers	Brain Inferior Temporal Lobe	brain
7	chr7:150668400-150671600	Enhancers	Right Atrium	heart
8	chr7:150669200-150671800	Bivalent Enhancer	Fetal Muscle Trunk	muscle
9	chr7:150669600-150671800	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
10	chr7:150669600-150671800	Weak transcription	Brain Hippocampus Middle	brain
11	chr7:150669600-150671800	Weak transcription	Small Intestine	intestine
12	chr7:150669800-150671800	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
13	chr7:150669800-150671800	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
14	chr7:150669800-150671800	Enhancers	Colon Smooth Muscle	Colon
15	chr7:150669800-150671800	Bivalent Enhancer	Fetal Muscle Leg	muscle
16	chr7:150670000-150672400	Weak transcription	HSMMtube	muscle
17	chr7:150670200-150671800	Bivalent Enhancer	Skeletal Muscle Female	skeletal muscle
18	chr7:150670400-150671800	Enhancers	Primary T helper memory cells from peripheral blood 1	blood
19	chr7:150670600-150671800	Weak transcription	Pancreatic Islets	Pancreatic Islet
20	chr7:150670800-150671800	Weak transcription	Cortex derived primary cultured neurospheres	brain
21	chr7:150670800-150671800	Weak transcription	Brain Cingulate Gyrus	brain
22	chr7:150670800-150671800	Weak transcription	Brain Substantia Nigra	brain
23	chr7:150670800-150671800	Bivalent Enhancer	Fetal Adrenal Gland	Adrenal Gland
24	chr7:150670800-150671800	Enhancers	Gastric	stomach
25	chr7:150670800-150671800	Bivalent Enhancer	Stomach Mucosa	stomach
26	chr7:150670800-150674200	Bivalent Enhancer	Placenta	Placenta
27	chr7:150671000-150671600	Flanking Active TSS	Colonic Mucosa	Colon
28	chr7:150671000-150671800	Bivalent Enhancer	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
29	chr7:150671000-150671800	Bivalent Enhancer	Primary hematopoietic stem cells G-CSF-mobilized Female	--
30	chr7:150671000-150671800	Enhancers	Esophagus	oesophagus
31	chr7:150671000-150671800	Enhancers	Fetal Intestine Small	intestine
32	chr7:150671000-150671800	Enhancers	Lung	lung
33	chr7:150671200-150671600	Flanking Active TSS	H9 Cell Line	embryonic stem cell
34	chr7:150671200-150671600	Flanking Bivalent TSS/Enh	HUES48 Cell Line	embryonic stem cell
35	chr7:150671200-150671600	Flanking Bivalent TSS/Enh	HUES6 Cell Line	embryonic stem cell
36	chr7:150671200-150671600	Flanking Active TSS	iPS-15b Cell Line	embryonic stem cell
37	chr7:150671200-150671600	Flanking Active TSS	iPS DF 6.9 Cell Line	embryonic stem cell
38	chr7:150671200-150671600	Flanking Active TSS	Primary T cells fromperipheralblood	blood
39	chr7:150671200-150671600	Flanking Active TSS	Primary T helper memory cells from peripheral blood 2	blood
40	chr7:150671200-150671600	Flanking Active TSS	Primary T helper naive cells from peripheral blood	blood
41	chr7:150671200-150671600	Flanking Active TSS	Primary T helper naive cells fromperipheralblood	blood
42	chr7:150671200-150671600	Flanking Active TSS	Primary T helper cells PMA-I stimulated	--
43	chr7:150671200-150671600	Flanking Active TSS	Primary T helper 17 cells PMA-I stimulated	--
44	chr7:150671200-150671600	Flanking Active TSS	Primary T regulatory cells fromperipheralblood	blood
45	chr7:150671200-150671600	Flanking Active TSS	Primary T killer memory cells from peripheral blood	blood
46	chr7:150671200-150671600	Flanking Active TSS	Duodenum Mucosa	Duodenum
47	chr7:150671200-150671600	Flanking Bivalent TSS/Enh	Duodenum Smooth Muscle	Duodenum
48	chr7:150671200-150671600	Enhancers	Ovary	ovary
49	chr7:150671200-150671600	Flanking Active TSS	Rectal Mucosa Donor 29	rectum
50	chr7:150671200-150671600	Flanking Active TSS	Rectal Mucosa Donor 31	rectum

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