Variant report

Variant	rs549343670
Chromosome Location	chr4:110498127-110498128
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	lncRNA name	Chromosome Location	lncRNA alias
1	lnc-CASP6-4	chr4:110497648-110498165	ucscGeneNc_uc003hzi_1

Extended variants
information (count: 4 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv461613	chr4:109922064-110593460	Enhancers Flanking Active TSS Weak transcription Bivalent/Poised TSS Bivalent Enhancer Strong transcription Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	43 gene(s)	inside rSNPs	diseases
2	nsv595129	chr4:109922064-110593460	Strong transcription Weak transcription Active TSS Bivalent/Poised TSS Flanking Active TSS Enhancers Flanking Bivalent TSS/Enh Genic enhancers Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	43 gene(s)	inside rSNPs	diseases
3	esv3349784	chr4:110348873-110723163	Enhancers Flanking Active TSS Weak transcription ZNF genes & repeats Active TSS Strong transcription Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	35 gene(s)	inside rSNPs	diseases
4	esv2518482	chr4:110497901-110499556	Enhancers Weak transcription Genic enhancers	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases

No data

Chromatin state (count:30 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:110483000-110498200	Weak transcription	HMEC	breast
2	chr4:110484200-110509400	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
3	chr4:110484400-110509400	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
4	chr4:110484400-110509400	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
5	chr4:110484400-110509400	Weak transcription	Thymus	Thymus
6	chr4:110490000-110502600	Weak transcription	Monocytes-CD14+_RO01746	blood
7	chr4:110494800-110499600	Enhancers	Primary T helper cells fromperipheralblood	blood
8	chr4:110495000-110498200	Enhancers	Primary T helper memory cells from peripheral blood 1	blood
9	chr4:110495400-110498600	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
10	chr4:110496200-110498400	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
11	chr4:110496200-110500600	Enhancers	Primary T helper naive cells fromperipheralblood	blood
12	chr4:110496400-110498400	Enhancers	Primary T helper naive cells from peripheral blood	blood
13	chr4:110496400-110499600	Enhancers	Primary T helper cells PMA-I stimulated	--
14	chr4:110496400-110500000	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
15	chr4:110496400-110500400	Weak transcription	Fetal Thymus	thymus
16	chr4:110496400-110509000	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
17	chr4:110496400-110510200	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
18	chr4:110496600-110499600	Weak transcription	Primary T cells fromperipheralblood	blood
19	chr4:110496600-110503800	Weak transcription	Primary B cells from peripheral blood	blood
20	chr4:110496800-110498400	Enhancers	Placenta	Placenta
21	chr4:110497200-110499600	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
22	chr4:110497200-110500000	Enhancers	Primary T killer naive cells fromperipheralblood	blood
23	chr4:110497400-110498200	Enhancers	Cortex derived primary cultured neurospheres	brain
24	chr4:110497400-110499800	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
25	chr4:110497400-110504000	Weak transcription	Primary T killer memory cells from peripheral blood	blood
26	chr4:110497600-110498600	Enhancers	HUVEC	blood vessel
27	chr4:110497800-110498200	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
28	chr4:110497800-110501000	Weak transcription	Primary hematopoietic stem cells short term culture	blood
29	chr4:110498000-110499600	Weak transcription	Primary T cells from cord blood	blood
30	chr4:110498000-110504400	Weak transcription	Primary monocytes fromperipheralblood	blood

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