Variant report

Variant	rs549353536
Chromosome Location	chr4:102203243-102203244
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr4:102202182..102203692-chr4:102205246..102206935,2	MCF-7	breast:
2	chr4:102195298..102197332-chr4:102200967..102203266,2	MCF-7	breast:

Extended variants
information (count: 7 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:7 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv931418	chr4:101500167-102443207	Weak transcription Enhancers Active TSS Flanking Active TSS Strong transcription Genic enhancers Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	14 gene(s)	inside rSNPs	diseases
2	nsv999741	chr4:102009017-102454115	Enhancers Flanking Active TSS Weak transcription Active TSS Strong transcription ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3' Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA	7 gene(s)	inside rSNPs	diseases
3	nsv537199	chr4:102009017-102454115	Weak transcription Enhancers Flanking Active TSS Active TSS Strong transcription Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA	7 gene(s)	inside rSNPs	diseases
4	nsv1004766	chr4:102009017-102713765	Flanking Active TSS Enhancers Weak transcription Active TSS Strong transcription Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA	8 gene(s)	inside rSNPs	diseases
5	nsv537200	chr4:102009017-102713765	Weak transcription Flanking Active TSS Enhancers Active TSS Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS ZNF genes & repeats Bivalent Enhancer Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	8 gene(s)	inside rSNPs	diseases
6	nsv1011351	chr4:102056024-102450302	Weak transcription Enhancers Active TSS ZNF genes & repeats Flanking Active TSS Strong transcription Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA	6 gene(s)	inside rSNPs	diseases
7	nsv879676	chr4:102202285-102340930	Weak transcription Enhancers Flanking Active TSS Active TSS Bivalent/Poised TSS Bivalent Enhancer Strong transcription ZNF genes & repeats Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	6 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:82 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:102192800-102208600	Weak transcription	Fetal Kidney	kidney
2	chr4:102193000-102203400	Weak transcription	Brain Angular Gyrus	brain
3	chr4:102194000-102205200	Weak transcription	Pancreatic Islets	Pancreatic Islet
4	chr4:102195400-102203400	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
5	chr4:102197400-102203600	Weak transcription	Left Ventricle	heart
6	chr4:102197400-102203600	Weak transcription	Pancreas	Pancrea
7	chr4:102198400-102206800	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
8	chr4:102198600-102203400	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
9	chr4:102198800-102207800	Enhancers	HUES64 Cell Line	embryonic stem cell
10	chr4:102199600-102203600	Weak transcription	Small Intestine	intestine
11	chr4:102199600-102205200	Enhancers	Primary B cells from peripheral blood	blood
12	chr4:102199600-102210400	Enhancers	iPS-18 Cell Line	embryonic stem cell
13	chr4:102199800-102206800	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
14	chr4:102200000-102211800	Weak transcription	HMEC	breast
15	chr4:102200200-102206200	Enhancers	iPS-15b Cell Line	embryonic stem cell
16	chr4:102200600-102211800	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
17	chr4:102200800-102204400	Weak transcription	Brain Inferior Temporal Lobe	brain
18	chr4:102200800-102206200	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
19	chr4:102200800-102206200	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
20	chr4:102200800-102209000	Weak transcription	Aorta	Aorta
21	chr4:102201000-102203400	Weak transcription	Psoas Muscle	Psoas
22	chr4:102201000-102203400	Weak transcription	Right Atrium	heart
23	chr4:102201000-102203600	Weak transcription	Fetal Thymus	thymus
24	chr4:102201000-102203600	Weak transcription	Sigmoid Colon	Sigmoid Colon
25	chr4:102201000-102206200	Weak transcription	Ovary	ovary
26	chr4:102201000-102206800	Weak transcription	Gastric	stomach
27	chr4:102201000-102207000	Weak transcription	Skeletal Muscle Male	skeletal muscle
28	chr4:102201000-102213000	Weak transcription	Fetal Heart	heart
29	chr4:102201200-102203400	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
30	chr4:102201200-102205200	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
31	chr4:102201200-102205200	Weak transcription	Muscle Satellite Cultured Cells	--
32	chr4:102201200-102205600	Weak transcription	HUVEC	blood vessel
33	chr4:102201200-102207800	Weak transcription	Adipose Nuclei	Adipose
34	chr4:102201200-102218200	Weak transcription	NHEK	skin
35	chr4:102201400-102203600	Weak transcription	GM12878-XiMat	blood
36	chr4:102201400-102204800	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
37	chr4:102201400-102205000	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
38	chr4:102201400-102205200	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
39	chr4:102201400-102205400	Weak transcription	A549	lung
40	chr4:102201400-102206000	Weak transcription	Duodenum Smooth Muscle	Duodenum
41	chr4:102201400-102206200	Weak transcription	NH-A	brain
42	chr4:102201400-102206800	Weak transcription	Osteobl	bone
43	chr4:102201400-102214200	Weak transcription	Brain Cingulate Gyrus	brain
44	chr4:102201600-102206000	Weak transcription	NHDF-Ad	bronchial
45	chr4:102201600-102206000	Weak transcription	NHLF	lung
46	chr4:102201600-102206200	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
47	chr4:102201600-102206800	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
48	chr4:102201800-102203400	Weak transcription	Primary monocytes fromperipheralblood	blood
49	chr4:102201800-102204000	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
50	chr4:102202000-102205000	Enhancers	HUES6 Cell Line	embryonic stem cell

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links