Variant report

Variant	rs549364402
Chromosome Location	chr5:73993668-73993669
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 2 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv13844	chr5:73979961-73993853	Enhancers Transcr. at gene 5' and 3' Weak transcription Strong transcription Flanking Active TSS Active TSS Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region	8 gene(s)	inside rSNPs	diseases
2	nsv598653	chr5:73992881-74095542	Active TSS Weak transcription Strong transcription Flanking Active TSS Enhancers ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	7 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:125 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:73982000-73994400	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
2	chr5:73982000-74002200	Weak transcription	Fetal Brain Female	brain
3	chr5:73982000-74017400	Weak transcription	Placenta Amnion	Placenta Amnion
4	chr5:73982000-74061800	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
5	chr5:73982200-74020600	Weak transcription	Fetal Brain Male	brain
6	chr5:73982400-73994600	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
7	chr5:73982400-73998200	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
8	chr5:73982400-73999400	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
9	chr5:73982400-74002200	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
10	chr5:73982600-73999400	Weak transcription	iPS-15b Cell Line	embryonic stem cell
11	chr5:73983000-74001000	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
12	chr5:73983000-74001600	Weak transcription	H9 Cell Line	embryonic stem cell
13	chr5:73983000-74017400	Weak transcription	Primary T helper naive cells from peripheral blood	blood
14	chr5:73983000-74027000	Weak transcription	Fetal Heart	heart
15	chr5:73983200-73994800	Weak transcription	Gastric	stomach
16	chr5:73983200-74002200	Weak transcription	Esophagus	oesophagus
17	chr5:73983200-74030200	Weak transcription	Small Intestine	intestine
18	chr5:73983400-73999000	Weak transcription	Colonic Mucosa	Colon
19	chr5:73983400-73999200	Weak transcription	Psoas Muscle	Psoas
20	chr5:73983400-74016000	Weak transcription	Primary T killer memory cells from peripheral blood	blood
21	chr5:73984400-74002200	Strong transcription	Primary monocytes fromperipheralblood	blood
22	chr5:73984600-74000400	Strong transcription	Monocytes-CD14+_RO01746	blood
23	chr5:73984600-74001000	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
24	chr5:73984600-74001600	Strong transcription	Primary hematopoietic stem cells short term culture	blood
25	chr5:73984600-74002600	Strong transcription	Primary neutrophils fromperipheralblood	blood
26	chr5:73984800-73995200	Strong transcription	Primary Natural Killer cells fromperipheralblood	blood
27	chr5:73984800-73995200	Strong transcription	Duodenum Smooth Muscle	Duodenum
28	chr5:73985000-73994000	Strong transcription	Placenta	Placenta
29	chr5:73985000-74002600	Strong transcription	Duodenum Mucosa	Duodenum
30	chr5:73985200-73995400	Strong transcription	Liver	Liver
31	chr5:73985200-74002600	Strong transcription	Breast Myoepithelial Primary Cells	Breast
32	chr5:73987200-74017400	Weak transcription	Fetal Kidney	kidney
33	chr5:73987400-73998200	Weak transcription	HSMM	muscle
34	chr5:73987600-74014800	Weak transcription	Fetal Lung	lung
35	chr5:73987800-73998200	Weak transcription	Muscle Satellite Cultured Cells	--
36	chr5:73987800-73999400	Weak transcription	Hela-S3	cervix
37	chr5:73988000-73997000	Strong transcription	Left Ventricle	heart
38	chr5:73988200-73995800	Strong transcription	Primary T helper cells fromperipheralblood	blood
39	chr5:73988400-74021000	Weak transcription	Right Ventricle	heart
40	chr5:73988800-73997000	Strong transcription	Primary mononuclear cells fromperipheralblood	Blood
41	chr5:73989200-73998600	Weak transcription	Fetal Muscle Leg	muscle
42	chr5:73989400-73998200	Weak transcription	K562	blood
43	chr5:73989600-74001000	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
44	chr5:73989800-74000600	Weak transcription	HUVEC	blood vessel
45	chr5:73989800-74002200	Weak transcription	Brain Angular Gyrus	brain
46	chr5:73989800-74002600	Strong transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
47	chr5:73990000-73999000	Weak transcription	Lung	lung
48	chr5:73990000-74016200	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
49	chr5:73990200-73994600	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
50	chr5:73990200-73998200	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links