Variant report

Variant	rs549376882
Chromosome Location	chr11:119650229-119650230
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 2 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv898423	chr11:119541332-119659753	Flanking Active TSS ZNF genes & repeats Enhancers Weak transcription Bivalent Enhancer Bivalent/Poised TSS Active TSS Strong transcription Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases
2	nsv528824	chr11:119650105-119661809	Enhancers Bivalent Enhancer Weak transcription ZNF genes & repeats Flanking Bivalent TSS/Enh Flanking Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:15 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:119641400-119652600	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
2	chr11:119645200-119652800	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
3	chr11:119647000-119654400	Enhancers	Fetal Heart	heart
4	chr11:119648600-119653200	Enhancers	Right Ventricle	heart
5	chr11:119648800-119650400	Bivalent Enhancer	Fetal Muscle Leg	muscle
6	chr11:119649000-119650800	Bivalent Enhancer	Fetal Muscle Trunk	muscle
7	chr11:119649600-119652600	Weak transcription	GM12878-XiMat	blood
8	chr11:119649600-119653000	Weak transcription	Brain Inferior Temporal Lobe	brain
9	chr11:119649600-119653400	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
10	chr11:119650000-119651000	Weak transcription	Left Ventricle	heart
11	chr11:119650000-119651400	Enhancers	Breast Myoepithelial Primary Cells	Breast
12	chr11:119650000-119651400	Bivalent Enhancer	Fetal Stomach	stomach
13	chr11:119650000-119652600	Enhancers	Right Atrium	heart
14	chr11:119650200-119650400	Bivalent Enhancer	Placenta	Placenta
15	chr11:119650200-119651400	Enhancers	Ovary	ovary

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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