Variant report

Variant	rs549394176
Chromosome Location	chr10:4857219-4857220
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr10:4855444..4858431-chr10:5530481..5532071,2	MCF-7	breast:
2	chr10:4857132..4857686-chr10:5425226..5426179,2	K562	blood:
3	chr10:4857209..4858993-chr10:4874035..4875917,2	K562	blood:
4	chr10:4856147..4859117-chr10:5323721..5326556,2	K562	blood:
5	chr10:4856908..4859105-chr10:4868238..4871321,3	MCF-7	breast:
6	chr10:4857079..4859136-chr10:4895299..4898229,2	K562	blood:
7	chr10:4857197..4858287-chr10:5475785..5476862,3	MCF-7	breast:

Variant related genes	Relation type
ENSG00000165568	Chromatin interaction

Extended variants
information (count: 6 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv894787	chr10:4385379-4857717	Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats Strong transcription Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	20 gene(s)	inside rSNPs	diseases
2	nsv894792	chr10:4832920-5498724	Enhancers Weak transcription Flanking Active TSS Active TSS Genic enhancers ZNF genes & repeats Strong transcription Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	47 gene(s)	inside rSNPs	diseases
3	esv1805102	chr10:4856852-4858356	Enhancers Weak transcription Active TSS Flanking Active TSS	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
4	esv1806530	chr10:4856852-4858356	Active TSS Weak transcription Enhancers Flanking Active TSS	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
5	esv3522611	chr10:4857002-4859200	Flanking Active TSS Enhancers ZNF genes & repeats Active TSS Weak transcription	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
6	esv3522612	chr10:4857002-4859200	Weak transcription Enhancers Active TSS Flanking Active TSS ZNF genes & repeats	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:28 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:4853200-4857800	Enhancers	Primary monocytes fromperipheralblood	blood
2	chr10:4854600-4857600	Enhancers	Osteobl	bone
3	chr10:4855400-4867400	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
4	chr10:4855600-4857400	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
5	chr10:4855600-4862800	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
6	chr10:4856600-4857600	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
7	chr10:4856800-4857600	Enhancers	HMEC	breast
8	chr10:4856800-4857600	Enhancers	HUVEC	blood vessel
9	chr10:4857000-4857400	Flanking Active TSS	K562	blood
10	chr10:4857000-4857600	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
11	chr10:4857000-4857600	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
12	chr10:4857000-4857600	Enhancers	Primary T helper cells PMA-I stimulated	--
13	chr10:4857000-4857600	Flanking Active TSS	Monocytes-CD14+_RO01746	blood
14	chr10:4857200-4857400	Enhancers	Primary T helper memory cells from peripheral blood 1	blood
15	chr10:4857200-4857400	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
16	chr10:4857200-4857400	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
17	chr10:4857200-4857400	Enhancers	Esophagus	oesophagus
18	chr10:4857200-4857400	Flanking Active TSS	Hela-S3	cervix
19	chr10:4857200-4857600	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
20	chr10:4857200-4857600	Enhancers	Primary T cells fromperipheralblood	blood
21	chr10:4857200-4857600	Enhancers	Primary T helper 17 cells PMA-I stimulated	--
22	chr10:4857200-4857600	Enhancers	Primary T cells effector/memory enriched fromperipheralblood	blood
23	chr10:4857200-4857600	Enhancers	Primary Natural Killer cells fromperipheralblood	blood
24	chr10:4857200-4857600	Enhancers	Muscle Satellite Cultured Cells	--
25	chr10:4857200-4857600	Active TSS	A549	lung
26	chr10:4857200-4857600	Active TSS	HepG2	liver
27	chr10:4857200-4857800	Enhancers	Primary T helper cells fromperipheralblood	blood
28	chr10:4857200-4857800	Enhancers	Dnd41	blood

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