Variant report

Variant	rs549394837
Chromosome Location	chr3:177625499-177625500
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 2 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv931055	chr3:177229521-177889872	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Bivalent Enhancer Genic enhancers Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	15 gene(s)	inside rSNPs	diseases
2	nsv979904	chr3:177624544-177633799	Enhancers Flanking Active TSS ZNF genes & repeats Weak transcription	lncRNA	n/a	inside rSNPs	diseases

No data

Chromatin state (count:9 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:177617800-177628000	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
2	chr3:177621800-177625800	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
3	chr3:177624400-177646600	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
4	chr3:177624800-177627200	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
5	chr3:177625000-177626200	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
6	chr3:177625200-177625600	Weak transcription	Adipose Nuclei	Adipose
7	chr3:177625200-177626200	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
8	chr3:177625200-177626200	Weak transcription	Brain Germinal Matrix	brain
9	chr3:177625200-177626200	Weak transcription	NHLF	lung

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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