Variant report

Variant	rs549396067
Chromosome Location	chr13:39585408-39585409
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr13:39584395..39587085-chr13:39611673..39614003,2	MCF-7	breast:
2	chr13:39583306..39585732-chr13:39594165..39596602,2	K562	blood:
3	chr13:39585404..39588263-chr13:39595787..39598231,3	K562	blood:

Variant related genes	Relation type
ENSG00000188811	Chromatin interaction
ENSG00000120685	Chromatin interaction

Extended variants
information (count: 4 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2754118	chr13:39347702-40222644	Flanking Active TSS Enhancers Weak transcription ZNF genes & repeats Bivalent Enhancer Strong transcription Active TSS Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	22 gene(s)	inside rSNPs	diseases
2	esv2753642	chr13:39522300-39649000	Strong transcription Active TSS Weak transcription Flanking Active TSS Genic enhancers Enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region miRNA target site	10 gene(s)	inside rSNPs	diseases
3	esv2753553	chr13:39526600-39649000	Strong transcription Enhancers Active TSS Weak transcription Flanking Active TSS Genic enhancers ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region miRNA target site	10 gene(s)	inside rSNPs	diseases
4	nsv977227	chr13:39584329-39585449	Weak transcription Strong transcription Genic enhancers Enhancers	Chromatin interactive region miRNA target site	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:126 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr13:39580800-39586200	Weak transcription	Colonic Mucosa	Colon
2	chr13:39581600-39590800	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
3	chr13:39581600-39592000	Strong transcription	Primary Natural Killer cells fromperipheralblood	blood
4	chr13:39581600-39592400	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
5	chr13:39581800-39589400	Strong transcription	Brain Germinal Matrix	brain
6	chr13:39581800-39592200	Strong transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
7	chr13:39581800-39593200	Strong transcription	HSMM	muscle
8	chr13:39581800-39597000	Strong transcription	HUES6 Cell Line	embryonic stem cell
9	chr13:39582000-39588000	Weak transcription	Pancreatic Islets	Pancreatic Islet
10	chr13:39582000-39596600	Strong transcription	HUES48 Cell Line	embryonic stem cell
11	chr13:39582000-39608200	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
12	chr13:39582200-39590800	Strong transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
13	chr13:39582200-39592600	Strong transcription	Fetal Thymus	thymus
14	chr13:39582200-39593400	Strong transcription	Primary neutrophils fromperipheralblood	blood
15	chr13:39582200-39596400	Strong transcription	iPS-20b Cell Line	embryonic stem cell
16	chr13:39582200-39596800	Strong transcription	HUES64 Cell Line	embryonic stem cell
17	chr13:39582200-39597400	Strong transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
18	chr13:39582400-39590400	Strong transcription	Skeletal Muscle Female	skeletal muscle
19	chr13:39582400-39590400	Strong transcription	GM12878-XiMat	blood
20	chr13:39582400-39605400	Strong transcription	Monocytes-CD14+_RO01746	blood
21	chr13:39582600-39586000	Strong transcription	Cortex derived primary cultured neurospheres	brain
22	chr13:39582600-39589600	Strong transcription	Primary T helper 17 cells PMA-I stimulated	--
23	chr13:39582600-39592000	Strong transcription	Placenta	Placenta
24	chr13:39582600-39592400	Strong transcription	Duodenum Mucosa	Duodenum
25	chr13:39582600-39592400	Strong transcription	Rectal Mucosa Donor 29	rectum
26	chr13:39582800-39593600	Strong transcription	Primary T helper cells PMA-I stimulated	--
27	chr13:39583000-39592400	Strong transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
28	chr13:39583200-39592400	Strong transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
29	chr13:39583200-39592400	Strong transcription	Primary B cells from peripheral blood	blood
30	chr13:39583200-39592400	Strong transcription	Adipose Nuclei	Adipose
31	chr13:39583200-39593200	Strong transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
32	chr13:39583200-39606600	Strong transcription	Primary monocytes fromperipheralblood	blood
33	chr13:39583400-39585600	Weak transcription	Primary T helper naive cells from peripheral blood	blood
34	chr13:39583400-39586800	Strong transcription	Primary T helper memory cells from peripheral blood 1	blood
35	chr13:39583400-39587000	Weak transcription	Placenta Amnion	Placenta Amnion
36	chr13:39583400-39587600	Weak transcription	Primary T killer memory cells from peripheral blood	blood
37	chr13:39583400-39592400	Strong transcription	Duodenum Smooth Muscle	Duodenum
38	chr13:39583400-39592600	Strong transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
39	chr13:39583400-39593200	Strong transcription	Rectal Mucosa Donor 31	rectum
40	chr13:39583600-39586800	Weak transcription	Small Intestine	intestine
41	chr13:39583600-39587400	Weak transcription	Psoas Muscle	Psoas
42	chr13:39583600-39597200	Strong transcription	iPS-18 Cell Line	embryonic stem cell
43	chr13:39583800-39592400	Strong transcription	Foreskin Melanocyte Primary Cells skin03	Skin
44	chr13:39583800-39592600	Strong transcription	Primary T cells fromperipheralblood	blood
45	chr13:39584000-39585800	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
46	chr13:39584000-39586200	Strong transcription	Primary T helper memory cells from peripheral blood 2	blood
47	chr13:39584000-39597600	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
48	chr13:39584200-39591200	Strong transcription	NHLF	lung
49	chr13:39584200-39591400	Strong transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
50	chr13:39584200-39592400	Strong transcription	Osteobl	bone

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