Variant report

Variant	rs549412087
Chromosome Location	chr1:179110611-179110612
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr1:179091554..179094304-chr1:179109132..179111261,2	MCF-7	breast:

Extended variants
information (count: 4 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1012667	chr1:179094571-179120280	Weak transcription Enhancers ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3' Strong transcription Flanking Active TSS Active TSS	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
2	nsv1002253	chr1:179094571-179120938	Strong transcription Genic enhancers Enhancers Weak transcription Flanking Active TSS Transcr. at gene 5' and 3' Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
3	nsv1001191	chr1:179097246-179120938	Weak transcription Flanking Active TSS Enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Strong transcription Genic enhancers Active TSS	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
4	nsv1009493	chr1:179110523-179121079	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Active TSS Strong transcription	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:97 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:179063200-179112000	Weak transcription	Fetal Kidney	kidney
2	chr1:179087800-179113000	Weak transcription	Placenta Amnion	Placenta Amnion
3	chr1:179093400-179117200	Weak transcription	Fetal Stomach	stomach
4	chr1:179098200-179112000	Weak transcription	Lung	lung
5	chr1:179099200-179114800	Weak transcription	Brain Cingulate Gyrus	brain
6	chr1:179099400-179112000	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
7	chr1:179099400-179112000	Weak transcription	Left Ventricle	heart
8	chr1:179099600-179110800	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
9	chr1:179099600-179116800	Weak transcription	Thymus	Thymus
10	chr1:179099600-179119400	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
11	chr1:179099600-179122600	Weak transcription	Stomach Smooth Muscle	stomach
12	chr1:179099800-179111800	Weak transcription	HepG2	liver
13	chr1:179100000-179121000	Weak transcription	Rectal Mucosa Donor 31	rectum
14	chr1:179100600-179110800	Weak transcription	Brain Inferior Temporal Lobe	brain
15	chr1:179100600-179112000	Weak transcription	Sigmoid Colon	Sigmoid Colon
16	chr1:179100600-179117200	Weak transcription	Fetal Intestine Small	intestine
17	chr1:179107200-179110800	Weak transcription	Skeletal Muscle Female	skeletal muscle
18	chr1:179107200-179112000	Weak transcription	Brain Substantia Nigra	brain
19	chr1:179107400-179111000	Weak transcription	Skeletal Muscle Male	skeletal muscle
20	chr1:179107600-179111800	Weak transcription	Fetal Muscle Leg	muscle
21	chr1:179107600-179112000	Weak transcription	Fetal Lung	lung
22	chr1:179107600-179112000	Weak transcription	Placenta	Placenta
23	chr1:179107600-179119800	Weak transcription	Liver	Liver
24	chr1:179108200-179113200	Active TSS	Foreskin Melanocyte Primary Cells skin01	Skin
25	chr1:179109000-179110800	Weak transcription	Brain Hippocampus Middle	brain
26	chr1:179109400-179110800	Weak transcription	Right Atrium	heart
27	chr1:179109400-179110800	Enhancers	Hela-S3	cervix
28	chr1:179109400-179112000	Weak transcription	H9 Cell Line	embryonic stem cell
29	chr1:179109400-179112000	Weak transcription	Pancreas	Pancrea
30	chr1:179109400-179112400	Active TSS	Breast Myoepithelial Primary Cells	Breast
31	chr1:179109400-179112400	Active TSS	Psoas Muscle	Psoas
32	chr1:179109600-179110800	Weak transcription	iPS-20b Cell Line	embryonic stem cell
33	chr1:179109600-179110800	Weak transcription	A549	lung
34	chr1:179109600-179112600	Active TSS	NHDF-Ad	bronchial
35	chr1:179109800-179112400	Enhancers	Primary T helper naive cells fromperipheralblood	blood
36	chr1:179109800-179112400	Enhancers	Primary T killer naive cells fromperipheralblood	blood
37	chr1:179109800-179112800	Active TSS	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
38	chr1:179110000-179110800	Weak transcription	HUES6 Cell Line	embryonic stem cell
39	chr1:179110000-179111000	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
40	chr1:179110000-179111000	Enhancers	Primary B cells from cord blood	blood
41	chr1:179110000-179112000	Weak transcription	Small Intestine	intestine
42	chr1:179110000-179112200	Active TSS	HSMM	muscle
43	chr1:179110000-179112400	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
44	chr1:179110000-179112400	Active TSS	Muscle Satellite Cultured Cells	--
45	chr1:179110000-179112400	Active TSS	Foreskin Fibroblast Primary Cells skin02	Skin
46	chr1:179110000-179112400	Active TSS	Foreskin Keratinocyte Primary Cells skin02	Skin
47	chr1:179110000-179112600	Active TSS	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
48	chr1:179110000-179112600	Active TSS	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
49	chr1:179110000-179112600	Active TSS	HSMMtube	muscle
50	chr1:179110000-179112600	Active TSS	NH-A	brain

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