Variant report

Variant	rs549440525
Chromosome Location	chr7:37997976-37997977
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 2 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv8074	chr7:37865340-38210087	ZNF genes & repeats Enhancers Weak transcription Bivalent/Poised TSS Flanking Active TSS Active TSS Strong transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	8 gene(s)	inside rSNPs	diseases
2	esv3381958	chr7:37997777-37999875	Weak transcription Enhancers	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:10 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:37989400-37998800	Weak transcription	Thymus	Thymus
2	chr7:37992200-38017600	Weak transcription	Ovary	ovary
3	chr7:37992400-37998200	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
4	chr7:37992600-37999200	Weak transcription	Breast Myoepithelial Primary Cells	Breast
5	chr7:37992600-38026800	Weak transcription	Pancreas	Pancrea
6	chr7:37993000-38007600	Weak transcription	Primary hematopoietic stem cells short term culture	blood
7	chr7:37993400-37999600	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
8	chr7:37993800-38007400	Weak transcription	A549	lung
9	chr7:37997600-38010600	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
10	chr7:37997800-38005000	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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