Variant report

Variant	rs549448530
Chromosome Location	chr2:168348644-168348645
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 4 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv491872	chr2:168220323-168737986	ZNF genes & repeats Weak transcription Enhancers Flanking Active TSS Strong transcription Active TSS Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
2	esv3388045	chr2:168289403-168424317	Enhancers ZNF genes & repeats Weak transcription Flanking Active TSS Active TSS Strong transcription Flanking Bivalent TSS/Enh Bivalent Enhancer Genic enhancers	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
3	nsv834449	chr2:168340043-168511856	Weak transcription Enhancers ZNF genes & repeats Strong transcription Flanking Active TSS Active TSS Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
4	nsv963936	chr2:168347505-168352736	Enhancers Weak transcription Strong transcription	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases

No data

Chromatin state (count:16 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:168337000-168355400	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
2	chr2:168338200-168366000	Weak transcription	H1 Cell Line	embryonic stem cell
3	chr2:168338400-168349400	Weak transcription	ES-I3 Cell Line	embryonic stem cell
4	chr2:168338400-168352400	Weak transcription	HUES6 Cell Line	embryonic stem cell
5	chr2:168341600-168352600	Weak transcription	iPS-18 Cell Line	embryonic stem cell
6	chr2:168341600-168352800	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
7	chr2:168341600-168365200	Weak transcription	iPS-20b Cell Line	embryonic stem cell
8	chr2:168342200-168352400	Weak transcription	iPS-15b Cell Line	embryonic stem cell
9	chr2:168343600-168352400	Weak transcription	H9 Cell Line	embryonic stem cell
10	chr2:168346200-168358800	Weak transcription	Fetal Lung	lung
11	chr2:168346800-168349800	Strong transcription	HUES48 Cell Line	embryonic stem cell
12	chr2:168347400-168354000	Weak transcription	Breast Myoepithelial Primary Cells	Breast
13	chr2:168347600-168352600	Weak transcription	Cortex derived primary cultured neurospheres	brain
14	chr2:168347800-168352800	Weak transcription	HUES64 Cell Line	embryonic stem cell
15	chr2:168348200-168350200	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
16	chr2:168348400-168349600	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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