Variant report

Variant	rs549451558
Chromosome Location	chr14:24427572-24427573
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr14:24421589..24424746-chr14:24425153..24428957,4	MCF-7	breast:

Variant related genes	Relation type
ENSG00000215256	Chromatin interaction
ENSG00000157326	Chromatin interaction

Extended variants
information (count: 23 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:23 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3405661	chr14:24189883-24670942	Strong transcription Enhancers Flanking Active TSS Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' Weak transcription Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	131 gene(s)	inside rSNPs	diseases
2	nsv1217	chr14:24400565-24512689	Active TSS Enhancers Weak transcription Flanking Active TSS Genic enhancers Strong transcription Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	20 gene(s)	inside rSNPs	diseases
3	nsv89	chr14:24405198-24475213	Enhancers Active TSS Flanking Active TSS Weak transcription Strong transcription ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	15 gene(s)	inside rSNPs	diseases
4	nsv1049316	chr14:24405420-24583724	Enhancers Active TSS Bivalent Enhancer Flanking Active TSS Strong transcription Flanking Bivalent TSS/Enh Weak transcription Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	72 gene(s)	inside rSNPs	diseases
5	nsv541999	chr14:24405420-24583724	Enhancers Active TSS Weak transcription Flanking Active TSS Strong transcription ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	72 gene(s)	inside rSNPs	diseases
6	nsv564046	chr14:24412772-24480333	Flanking Active TSS Active TSS Weak transcription Enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3' Genic enhancers Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	14 gene(s)	inside rSNPs	diseases
7	nsv1036970	chr14:24414285-24461842	Enhancers Active TSS Weak transcription Flanking Active TSS Strong transcription Flanking Bivalent TSS/Enh Genic enhancers ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	14 gene(s)	inside rSNPs	diseases
8	nsv1045802	chr14:24414285-24484459	Enhancers Flanking Active TSS Weak transcription Active TSS Strong transcription ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	15 gene(s)	inside rSNPs	diseases
9	nsv1039814	chr14:24414285-24489426	Weak transcription Enhancers Active TSS Flanking Active TSS Strong transcription Bivalent Enhancer Bivalent/Poised TSS Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	15 gene(s)	inside rSNPs	diseases
10	nsv1047294	chr14:24414285-24500633	Flanking Active TSS Active TSS Enhancers Weak transcription Strong transcription Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Genic enhancers Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	15 gene(s)	inside rSNPs	diseases
11	nsv1039694	chr14:24414285-24500989	Enhancers Active TSS Weak transcription Flanking Active TSS ZNF genes & repeats Genic enhancers Strong transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	15 gene(s)	inside rSNPs	diseases
12	esv3310704	chr14:24420176-24454755	Strong transcription Flanking Active TSS Active TSS Weak transcription Enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Genic enhancers Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	14 gene(s)	inside rSNPs	diseases
13	esv3310705	chr14:24420176-24454755	Weak transcription Enhancers Flanking Active TSS Strong transcription Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	14 gene(s)	inside rSNPs	diseases
14	nsv976811	chr14:24421381-24470070	Active TSS Flanking Active TSS Enhancers Weak transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS Strong transcription Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases
15	esv2761633	chr14:24423582-24513917	Flanking Active TSS Enhancers Weak transcription Active TSS Strong transcription Bivalent Enhancer Bivalent/Poised TSS Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	17 gene(s)	inside rSNPs	diseases
16	nsv1040467	chr14:24424032-24458931	Flanking Active TSS Weak transcription Enhancers Active TSS Flanking Bivalent TSS/Enh Genic enhancers Strong transcription Bivalent/Poised TSS ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
17	nsv9124	chr14:24424711-24474776	Enhancers Weak transcription Flanking Active TSS Active TSS Strong transcription Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
18	nsv1050070	chr14:24425058-24484459	Flanking Active TSS Active TSS Enhancers Weak transcription Bivalent/Poised TSS Strong transcription ZNF genes & repeats Flanking Bivalent TSS/Enh Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
19	nsv1042917	chr14:24426594-24479697	Enhancers Active TSS Weak transcription Bivalent/Poised TSS Flanking Active TSS Strong transcription Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
20	nsv1047997	chr14:24426594-24484459	Flanking Active TSS Enhancers Active TSS Bivalent/Poised TSS Weak transcription Strong transcription ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
21	nsv1046815	chr14:24426594-24488553	Active TSS Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Bivalent/Poised TSS Strong transcription Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
22	nsv1050491	chr14:24426594-24495038	Flanking Active TSS Enhancers Weak transcription Strong transcription Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
23	nsv983806	chr14:24427320-24439098	Enhancers Weak transcription Active TSS Flanking Active TSS Strong transcription Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:74 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:24423400-24429000	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
2	chr14:24423400-24431000	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
3	chr14:24423600-24430800	Weak transcription	Psoas Muscle	Psoas
4	chr14:24423600-24438800	Weak transcription	Lung	lung
5	chr14:24423600-24438800	Weak transcription	Ovary	ovary
6	chr14:24423800-24429200	Weak transcription	Fetal Intestine Small	intestine
7	chr14:24423800-24430800	Weak transcription	Fetal Thymus	thymus
8	chr14:24423800-24432400	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
9	chr14:24423800-24435600	Weak transcription	Primary B cells from cord blood	blood
10	chr14:24423800-24438200	Weak transcription	Primary T helper cells PMA-I stimulated	--
11	chr14:24423800-24438600	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
12	chr14:24423800-24438600	Weak transcription	Primary T helper cells fromperipheralblood	blood
13	chr14:24423800-24438800	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
14	chr14:24423800-24438800	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
15	chr14:24423800-24438800	Weak transcription	Left Ventricle	heart
16	chr14:24423800-24438800	Weak transcription	Right Ventricle	heart
17	chr14:24423800-24438800	Weak transcription	Osteobl	bone
18	chr14:24424000-24427600	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
19	chr14:24424000-24428200	Weak transcription	Brain Anterior Caudate	brain
20	chr14:24424000-24429000	Weak transcription	A549	lung
21	chr14:24424000-24435400	Weak transcription	Primary B cells from peripheral blood	blood
22	chr14:24424000-24437400	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
23	chr14:24424000-24438200	Weak transcription	Primary T cells fromperipheralblood	blood
24	chr14:24424000-24438200	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
25	chr14:24424000-24438800	Weak transcription	Primary hematopoietic stem cells	blood
26	chr14:24424000-24438800	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
27	chr14:24424000-24438800	Weak transcription	HSMM	muscle
28	chr14:24424000-24458000	Weak transcription	Primary T cells from cord blood	blood
29	chr14:24424200-24435400	Weak transcription	Primary hematopoietic stem cells short term culture	blood
30	chr14:24424200-24438200	Weak transcription	Rectal Smooth Muscle	rectum
31	chr14:24424200-24438800	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
32	chr14:24424200-24438800	Weak transcription	NHEK	skin
33	chr14:24424400-24427600	Weak transcription	Skeletal Muscle Male	skeletal muscle
34	chr14:24424400-24429200	Weak transcription	Placenta	Placenta
35	chr14:24424400-24429200	Weak transcription	Sigmoid Colon	Sigmoid Colon
36	chr14:24424400-24429800	Weak transcription	Esophagus	oesophagus
37	chr14:24424400-24430000	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
38	chr14:24424400-24432200	Weak transcription	Dnd41	blood
39	chr14:24424400-24436600	Weak transcription	Gastric	stomach
40	chr14:24424400-24438000	Weak transcription	Stomach Smooth Muscle	stomach
41	chr14:24424400-24438600	Weak transcription	Brain Hippocampus Middle	brain
42	chr14:24424400-24438800	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
43	chr14:24424400-24438800	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
44	chr14:24424400-24438800	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
45	chr14:24424400-24438800	Weak transcription	Muscle Satellite Cultured Cells	--
46	chr14:24424400-24438800	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
47	chr14:24424400-24438800	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
48	chr14:24424400-24438800	Weak transcription	Brain Inferior Temporal Lobe	brain
49	chr14:24424400-24438800	Weak transcription	Colonic Mucosa	Colon
50	chr14:24424400-24438800	Weak transcription	Fetal Muscle Leg	muscle

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