Variant report

Variant	rs549456696
Chromosome Location	chr9:16206892-16206893
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	lncRNA name	Chromosome Location	lncRNA alias
1	lnc-C9orf93-7	chr9:16206806-16209226	ucscGeneNc_uc003zmh_1

Extended variants
information (count: 4 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv949463	chr9:15970668-16377360	Enhancers ZNF genes & repeats Flanking Active TSS Weak transcription Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh Strong transcription Bivalent/Poised TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
2	nsv429999	chr9:16102066-16389100	Enhancers Active TSS Weak transcription Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Genic enhancers Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
3	nsv892639	chr9:16190403-16242088	Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
4	nsv892640	chr9:16206695-16260837	Enhancers Weak transcription Flanking Bivalent TSS/Enh Flanking Active TSS Active TSS Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:33 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:16197600-16207200	Weak transcription	Ovary	ovary
2	chr9:16202000-16207200	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
3	chr9:16203600-16207200	Weak transcription	Placenta Amnion	Placenta Amnion
4	chr9:16203600-16213600	Weak transcription	Rectal Smooth Muscle	rectum
5	chr9:16203800-16207000	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
6	chr9:16204400-16207200	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
7	chr9:16204400-16207200	Weak transcription	Fetal Lung	lung
8	chr9:16204400-16213600	Weak transcription	Colon Smooth Muscle	Colon
9	chr9:16204600-16207000	Weak transcription	Muscle Satellite Cultured Cells	--
10	chr9:16204600-16207200	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
11	chr9:16204600-16207200	Weak transcription	Osteobl	bone
12	chr9:16204600-16213200	Weak transcription	NHLF	lung
13	chr9:16204600-16213600	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
14	chr9:16204800-16207400	Weak transcription	HSMM	muscle
15	chr9:16205200-16207200	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
16	chr9:16206000-16213600	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
17	chr9:16206200-16207000	Enhancers	Primary hematopoietic stem cells	blood
18	chr9:16206200-16207000	Enhancers	Dnd41	blood
19	chr9:16206200-16207200	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
20	chr9:16206200-16207400	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
21	chr9:16206200-16207400	Enhancers	Fetal Kidney	kidney
22	chr9:16206400-16207000	Enhancers	Primary T cells from cord blood	blood
23	chr9:16206400-16207000	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
24	chr9:16206400-16207400	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
25	chr9:16206400-16207600	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
26	chr9:16206400-16207800	Enhancers	Fetal Thymus	thymus
27	chr9:16206600-16207200	Enhancers	HUES64 Cell Line	embryonic stem cell
28	chr9:16206600-16207200	Enhancers	Primary hematopoietic stem cells short term culture	blood
29	chr9:16206600-16207200	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
30	chr9:16206600-16207400	Enhancers	H9 Cell Line	embryonic stem cell
31	chr9:16206600-16207400	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
32	chr9:16206600-16207400	Enhancers	NHDF-Ad	bronchial
33	chr9:16206800-16207200	Enhancers	HSMMtube	muscle

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