Variant report

Variant	rs549468030
Chromosome Location	chr3:105122827-105122828
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 3 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv525071	chr3:105004853-105409321	Enhancers Strong transcription Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS Bivalent/Poised TSS Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	6 gene(s)	inside rSNPs	diseases
2	nsv829650	chr3:105070893-105255036	Enhancers Active TSS Weak transcription Flanking Active TSS Bivalent/Poised TSS Genic enhancers Strong transcription Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
3	nsv877304	chr3:105122214-105198374	Enhancers Weak transcription Active TSS ZNF genes & repeats Genic enhancers Flanking Active TSS Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	n/a

No data

Chromatin state (count:30 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:105114600-105123400	Weak transcription	HUES48 Cell Line	embryonic stem cell
2	chr3:105119000-105123000	Weak transcription	Liver	Liver
3	chr3:105119000-105133600	Weak transcription	Brain Angular Gyrus	brain
4	chr3:105119200-105123200	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
5	chr3:105120000-105130000	Weak transcription	Brain Cingulate Gyrus	brain
6	chr3:105120400-105129400	Weak transcription	Brain Anterior Caudate	brain
7	chr3:105121000-105134800	Weak transcription	NHLF	lung
8	chr3:105121200-105124000	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
9	chr3:105121200-105128600	Weak transcription	Pancreatic Islets	Pancreatic Islet
10	chr3:105121200-105130200	Weak transcription	Brain Hippocampus Middle	brain
11	chr3:105121400-105124600	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
12	chr3:105121600-105124000	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
13	chr3:105121600-105136600	Weak transcription	HSMM	muscle
14	chr3:105121800-105133600	Weak transcription	NH-A	brain
15	chr3:105121800-105133800	Weak transcription	Muscle Satellite Cultured Cells	--
16	chr3:105122000-105123000	ZNF genes & repeats	Ganglion Eminence derived primary cultured neurospheres	brain
17	chr3:105122200-105123000	Strong transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
18	chr3:105122200-105123000	ZNF genes & repeats	Primary hematopoietic stem cells	blood
19	chr3:105122200-105123200	ZNF genes & repeats	A549	lung
20	chr3:105122400-105123000	Strong transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
21	chr3:105122400-105123600	Weak transcription	H1 Cell Line	embryonic stem cell
22	chr3:105122400-105123800	Strong transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
23	chr3:105122400-105124200	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
24	chr3:105122400-105124400	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
25	chr3:105122400-105124800	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
26	chr3:105122400-105133000	Weak transcription	Gastric	stomach
27	chr3:105122400-105136600	Weak transcription	Osteobl	bone
28	chr3:105122600-105126800	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
29	chr3:105122600-105133200	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
30	chr3:105122600-105135800	Weak transcription	NHEK	skin

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