Variant report

Variant	rs549469839
Chromosome Location	chr2:58958567-58958568
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 3 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv431180	chr2:58857542-59178687	Enhancers Weak transcription Active TSS ZNF genes & repeats Flanking Active TSS Genic enhancers Flanking Bivalent TSS/Enh Strong transcription Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
2	nsv528866	chr2:58955953-58975143	ZNF genes & repeats Flanking Active TSS Enhancers Weak transcription Active TSS	Chromatin interactive region lncRNA	n/a	inside rSNPs	n/a
3	nsv518430	chr2:58958528-58959112	Enhancers Flanking Active TSS Weak transcription	Chromatin interactive region	n/a	inside rSNPs	n/a

No data

Chromatin state (count:10 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:58948400-58960000	Weak transcription	H1 Cell Line	embryonic stem cell
2	chr2:58954200-58958600	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
3	chr2:58954600-58963200	Enhancers	Primary hematopoietic stem cells	blood
4	chr2:58955000-58964400	Enhancers	Primary hematopoietic stem cells short term culture	blood
5	chr2:58958000-58959000	Enhancers	Monocytes-CD14+_RO01746	blood
6	chr2:58958000-58959200	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Male	--
7	chr2:58958400-58958600	Enhancers	iPS-15b Cell Line	embryonic stem cell
8	chr2:58958400-58958600	Flanking Active TSS	K562	blood
9	chr2:58958400-58958800	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
10	chr2:58958400-58958800	Enhancers	iPS-18 Cell Line	embryonic stem cell

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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