Variant report

Variant	rs549518377
Chromosome Location	chr15:41627076-41627077
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	CEBPD	chr15:41626559-41627130	K562	blood:	n/a	n/a
2	STAT5A	chr15:41626604-41627169	K562	blood:	n/a	chr15:41626755-41626763
3	NR2F2	chr15:41626415-41627198	K562	blood:	n/a	n/a
4	MAX	chr15:41626837-41627117	K562	blood:	n/a	n/a
5	POLR2A	chr15:41626641-41627098	K562	blood:	n/a	n/a
6	TEAD4	chr15:41626554-41627259	K562	blood:	n/a	n/a
7	IRF1	chr15:41626704-41627238	K562	blood:	n/a	n/a
8	JUN	chr15:41626765-41627165	K562	blood:	n/a	n/a
9	GATA2	chr15:41626579-41627103	K562	blood:	n/a	chr15:41626884-41626895
10	CEBPB	chr15:41626653-41627268	K562	blood:	n/a	n/a
11	GATA1	chr15:41626542-41627297	PBDE	blood:	n/a	chr15:41626884-41626895
12	POLR2A	chr15:41626561-41627147	GM12878	blood:	n/a	n/a
13	GTF3C2	chr15:41625093-41627178	Hela-S3	cervix:	n/a	n/a
14	KAP1	chr15:41626194-41627237	HEK293	kidney:	n/a	n/a
15	TAL1	chr15:41626652-41627222	K562	blood:	n/a	n/a
16	ZNF263	chr15:41626703-41627165	HEK293-T-REx	kidney:	n/a	n/a
17	POLR2A	chr15:41626621-41627097	K562	blood:	n/a	n/a
18	TEAD4	chr15:41626516-41627112	K562	blood:	n/a	n/a
19	ARID3A	chr15:41626673-41627190	K562	blood:	n/a	n/a
20	PML	chr15:41626563-41627115	K562	blood:	n/a	n/a
21	NR2F2	chr15:41626605-41627092	K562	blood:	n/a	n/a
22	CEBPD	chr15:41626657-41627183	K562	blood:	n/a	n/a

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr15:41623109..41624716-chr15:41626647..41628687,2	K562	blood:
2	chr15:41573497..41577986-chr15:41624362..41627823,9	K562	blood:

Variant related genes	Relation type
OIP5	TF binding region
ENSG00000104147	Chromatin interaction
ENSG00000247556	Chromatin interaction

Extended variants
information (count: 6 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1044438	chr15:41560160-41745480	Strong transcription Transcr. at gene 5' and 3' Active TSS ZNF genes & repeats Enhancers Genic enhancers Weak transcription Flanking Active TSS Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	85 gene(s)	inside rSNPs	diseases
2	nsv1038923	chr15:41585028-41754890	Strong transcription Active TSS Flanking Active TSS Weak transcription Enhancers Genic enhancers ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	66 gene(s)	inside rSNPs	diseases
3	nsv1045142	chr15:41585044-41738314	Weak transcription Flanking Active TSS Active TSS Enhancers ZNF genes & repeats Strong transcription Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	66 gene(s)	inside rSNPs	diseases
4	nsv1039283	chr15:41620499-41745480	Enhancers Active TSS Strong transcription Weak transcription Flanking Active TSS ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	63 gene(s)	inside rSNPs	diseases
5	esv3523301	chr15:41626760-41629083	Active TSS Weak transcription Enhancers Flanking Active TSS Genic enhancers Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	5 gene(s)	inside rSNPs	diseases
6	esv3523302	chr15:41626760-41629083	Weak transcription Active TSS Enhancers Genic enhancers Flanking Active TSS Transcr. at gene 5' and 3' Strong transcription	TF binding region CpG island Chromatin interactive region	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:100 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:41623000-41627200	Active TSS	HUES64 Cell Line	embryonic stem cell
2	chr15:41623000-41627200	Active TSS	iPS-15b Cell Line	embryonic stem cell
3	chr15:41623000-41627200	Active TSS	A549	lung
4	chr15:41623000-41627400	Active TSS	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
5	chr15:41623400-41627200	Active TSS	ES-I3 Cell Line	embryonic stem cell
6	chr15:41623400-41627200	Active TSS	H1 Cell Line	embryonic stem cell
7	chr15:41623400-41627400	Active TSS	HUES6 Cell Line	embryonic stem cell
8	chr15:41623600-41627200	Active TSS	iPS-20b Cell Line	embryonic stem cell
9	chr15:41623600-41627200	Active TSS	Thymus	Thymus
10	chr15:41623600-41627200	Active TSS	Hela-S3	cervix
11	chr15:41623800-41627200	Active TSS	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
12	chr15:41623800-41627200	Active TSS	NHDF-Ad	bronchial
13	chr15:41623800-41627400	Active TSS	GM12878-XiMat	blood
14	chr15:41623800-41627400	Active TSS	K562	blood
15	chr15:41624000-41627200	Active TSS	iPS-18 Cell Line	embryonic stem cell
16	chr15:41624000-41627400	Active TSS	ES-WA7 Cell Line	embryonic stem cell
17	chr15:41624200-41627200	Active TSS	H9 Derived Neuron Cultured Cells	ES cell derived
18	chr15:41624200-41627200	Active TSS	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
19	chr15:41624200-41627200	Active TSS	HSMM	muscle
20	chr15:41624200-41627400	Active TSS	Muscle Satellite Cultured Cells	--
21	chr15:41625400-41670200	Weak transcription	Gastric	stomach
22	chr15:41625600-41627200	Active TSS	Brain Germinal Matrix	brain
23	chr15:41625600-41659200	Weak transcription	Lung	lung
24	chr15:41625800-41665800	Weak transcription	Sigmoid Colon	Sigmoid Colon
25	chr15:41625800-41694200	Weak transcription	Small Intestine	intestine
26	chr15:41626000-41627200	Enhancers	Primary T killer naive cells fromperipheralblood	blood
27	chr15:41626000-41642000	Weak transcription	Ovary	ovary
28	chr15:41626000-41665200	Weak transcription	Placenta Amnion	Placenta Amnion
29	chr15:41626200-41627200	Enhancers	Primary B cells from peripheral blood	blood
30	chr15:41626200-41627200	Enhancers	Primary T helper naive cells from peripheral blood	blood
31	chr15:41626200-41627600	Weak transcription	Stomach Mucosa	stomach
32	chr15:41626200-41629800	Weak transcription	Fetal Intestine Large	intestine
33	chr15:41626200-41632000	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
34	chr15:41626200-41633600	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
35	chr15:41626200-41640600	Weak transcription	Skeletal Muscle Male	skeletal muscle
36	chr15:41626200-41643400	Weak transcription	Spleen	Spleen
37	chr15:41626200-41658200	Weak transcription	Breast Myoepithelial Primary Cells	Breast
38	chr15:41626200-41678200	Weak transcription	Liver	Liver
39	chr15:41626200-41680200	Weak transcription	Fetal Brain Male	brain
40	chr15:41626400-41627200	Enhancers	Primary T helper memory cells from peripheral blood 1	blood
41	chr15:41626400-41627200	Enhancers	Osteobl	bone
42	chr15:41626400-41627400	Flanking Active TSS	Dnd41	blood
43	chr15:41626400-41630200	Weak transcription	Fetal Heart	heart
44	chr15:41626400-41677800	Weak transcription	Rectal Mucosa Donor 31	rectum
45	chr15:41626400-41678400	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
46	chr15:41626600-41627200	Flanking Active TSS	Primary hematopoietic stem cells short term culture	blood
47	chr15:41626600-41627200	Flanking Active TSS	Foreskin Keratinocyte Primary Cells skin03	Skin
48	chr15:41626600-41627200	Flanking Active TSS	NHEK	skin
49	chr15:41626600-41627400	Transcr. at gene 5' and 3'	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
50	chr15:41626600-41627400	Flanking Active TSS	HUVEC	blood vessel

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links