Variant report

Variant	rs549534237
Chromosome Location	chr6:66011539-66011540
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	HEY1	chr6:66011201-66011592	HepG2	liver:	n/a	n/a
2	POLR2A	chr6:66011525-66011556	Hela-S3	cervix:	n/a	n/a
3	POLR2A	chr6:66011228-66011621	Hela-S3	cervix:	n/a	n/a
4	POLR2A	chr6:66011149-66011626	GM12878	blood:	n/a	n/a
5	POLR2A	chr6:66011201-66011654	GM12891	blood:	n/a	n/a
6	POLR2A	chr6:66011226-66011690	GM12892	blood:	n/a	n/a
7	POLR2A	chr6:66011127-66011642	SK-N-MC	brain:	n/a	n/a
8	POLR2A	chr6:66011092-66011771	H1-hESC	embryonic stem cell:	n/a	n/a
9	TAF1	chr6:66011163-66011574	Hela-S3	cervix:	n/a	n/a
10	HEY1	chr6:66011218-66011588	K562	blood:	n/a	n/a
11	POLR2A	chr6:66011139-66011617	GM12891	blood:	n/a	n/a
12	POLR2A	chr6:66011279-66011573	GM12891	blood:	n/a	n/a
13	POLR2A	chr6:66011095-66011694	GM12892	blood:	n/a	n/a
14	POLR2A	chr6:66011211-66011596	Hela-S3	cervix:	n/a	n/a
15	TAF1	chr6:66011155-66011610	H1-hESC	embryonic stem cell:	n/a	n/a
16	POLR2A	chr6:66011212-66011608	GM12892	blood:	n/a	n/a
17	POLR2A	chr6:66011279-66011561	GM12878	blood:	n/a	n/a
18	POLR2A	chr6:66011520-66011554	A549	lung:	n/a	n/a
19	GABPA	chr6:66011424-66011682	Hela-S3	cervix:	n/a	n/a
20	HEY1	chr6:66011204-66011645	K562	blood:	n/a	n/a
21	GABPA	chr6:66011448-66011609	Hela-S3	cervix:	n/a	n/a
22	POLR2A	chr6:66011252-66011663	GM12892	blood:	n/a	n/a
23	POLR2A	chr6:66011211-66011588	H1-hESC	embryonic stem cell:	n/a	n/a

Variant related genes	Relation type
ENSG00000214558	TF binding region

Extended variants
information (count: 21 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:21 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv930945	chr6:65814264-66045031	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	2 gene(s)	inside rSNPs	diseases
2	nsv933353	chr6:65814264-66045031	Weak transcription Enhancers ZNF genes & repeats Active TSS Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	2 gene(s)	inside rSNPs	diseases
3	nsv886011	chr6:65873577-66237309	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	3 gene(s)	inside rSNPs	diseases
4	nsv886012	chr6:65905998-66354809	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	3 gene(s)	inside rSNPs	diseases
5	esv2752619	chr6:65917536-66062893	Enhancers Weak transcription Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	2 gene(s)	inside rSNPs	diseases
6	nsv886013	chr6:65918809-66050797	Weak transcription Enhancers Flanking Active TSS	TF binding region CpG island lncRNA miRNA target site	2 gene(s)	inside rSNPs	diseases
7	nsv933487	chr6:65947165-66134134	Flanking Active TSS Enhancers Weak transcription	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	2 gene(s)	inside rSNPs	diseases
8	nsv516417	chr6:65952526-66083780	Enhancers Flanking Active TSS Weak transcription	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	2 gene(s)	inside rSNPs	diseases
9	nsv470823	chr6:65969239-66052674	Enhancers Weak transcription Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	2 gene(s)	inside rSNPs	diseases
10	nsv886014	chr6:65996855-66061173	Enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	2 gene(s)	inside rSNPs	diseases
11	nsv603431	chr6:66002389-66052675	Enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	2 gene(s)	inside rSNPs	diseases
12	nsv886015	chr6:66002389-66061173	Enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	2 gene(s)	inside rSNPs	diseases
13	nsv886016	chr6:66002389-66103595	Enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	2 gene(s)	inside rSNPs	diseases
14	nsv886017	chr6:66002887-66049528	Enhancers	TF binding region CpG island lncRNA miRNA target site	2 gene(s)	inside rSNPs	diseases
15	nsv603432	chr6:66006148-66052675	Enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	2 gene(s)	inside rSNPs	diseases
16	nsv462978	chr6:66006820-66072542	Enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	2 gene(s)	inside rSNPs	diseases
17	nsv462979	chr6:66006820-66072542	Enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	2 gene(s)	inside rSNPs	diseases
18	nsv603433	chr6:66006820-66072542	Enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	2 gene(s)	inside rSNPs	diseases
19	nsv886018	chr6:66009103-66091351	Enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	2 gene(s)	inside rSNPs	diseases
20	nsv886019	chr6:66009103-66103595	Enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	2 gene(s)	inside rSNPs	diseases
21	nsv981155	chr6:66011313-66035737	Enhancers	TF binding region CpG island lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:0 , 50 per page) page:

No data

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links