Variant report

Variant	rs549542297
Chromosome Location	chr9:116774896-116774897
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr9:116768367..116772045-chr9:116772665..116776100,5	MCF-7	breast:
2	chr9:116774861..116777762-chr9:117046301..117047948,2	MCF-7	breast:
3	chr9:116773678..116775995-chr9:116779298..116781749,2	K562	blood:
4	chr9:116773482..116775850-chr9:116777082..116779157,3	MCF-7	breast:

Extended variants
information (count: 3 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv430093	chr9:116330446-117325446	Weak transcription Enhancers Strong transcription Flanking Active TSS Bivalent/Poised TSS Active TSS Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	165 gene(s)	inside rSNPs	diseases
2	nsv521361	chr9:116774010-116780992	Weak transcription Strong transcription Enhancers ZNF genes & repeats Genic enhancers Flanking Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
3	nsv825056	chr9:116774890-116775792	Weak transcription Strong transcription ZNF genes & repeats	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:98 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:116733400-116800200	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
2	chr9:116736400-116783000	Weak transcription	ES-I3 Cell Line	embryonic stem cell
3	chr9:116756400-116775600	Weak transcription	Primary B cells from cord blood	blood
4	chr9:116756800-116779000	Weak transcription	Esophagus	oesophagus
5	chr9:116756800-116783800	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
6	chr9:116757000-116779600	Weak transcription	Colon Smooth Muscle	Colon
7	chr9:116757000-116779800	Weak transcription	Colonic Mucosa	Colon
8	chr9:116757000-116783400	Weak transcription	Small Intestine	intestine
9	chr9:116758400-116775000	Strong transcription	IMR90 fetal lung fibroblasts Cell Line	lung
10	chr9:116762200-116775400	Strong transcription	Liver	Liver
11	chr9:116762200-116780400	Weak transcription	Duodenum Mucosa	Duodenum
12	chr9:116762400-116776800	Strong transcription	Fetal Intestine Large	intestine
13	chr9:116763800-116777000	Strong transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
14	chr9:116764600-116797200	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
15	chr9:116765000-116783200	Weak transcription	NHEK	skin
16	chr9:116765800-116784400	Weak transcription	Sigmoid Colon	Sigmoid Colon
17	chr9:116766000-116784800	Weak transcription	Brain Inferior Temporal Lobe	brain
18	chr9:116766000-116792600	Weak transcription	Stomach Mucosa	stomach
19	chr9:116766000-116798000	Weak transcription	Rectal Mucosa Donor 29	rectum
20	chr9:116766200-116775000	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
21	chr9:116766200-116799000	Weak transcription	Rectal Smooth Muscle	rectum
22	chr9:116766600-116782400	Strong transcription	A549	lung
23	chr9:116766600-116811200	Weak transcription	Rectal Mucosa Donor 31	rectum
24	chr9:116766800-116775000	Strong transcription	Fetal Lung	lung
25	chr9:116767000-116780400	Weak transcription	Brain Angular Gyrus	brain
26	chr9:116767200-116779000	Weak transcription	Brain Hippocampus Middle	brain
27	chr9:116767200-116779400	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
28	chr9:116767200-116785800	Weak transcription	Brain Cingulate Gyrus	brain
29	chr9:116767400-116776200	Weak transcription	Brain Anterior Caudate	brain
30	chr9:116768000-116775000	Strong transcription	Fetal Muscle Trunk	muscle
31	chr9:116768000-116777000	Strong transcription	HSMM	muscle
32	chr9:116768400-116794600	Weak transcription	Cortex derived primary cultured neurospheres	brain
33	chr9:116768800-116778800	Weak transcription	Skeletal Muscle Female	skeletal muscle
34	chr9:116768800-116784800	Weak transcription	Muscle Satellite Cultured Cells	--
35	chr9:116769000-116775200	Strong transcription	Foreskin Melanocyte Primary Cells skin03	Skin
36	chr9:116769200-116779000	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
37	chr9:116769400-116775400	Strong transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
38	chr9:116769400-116778000	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
39	chr9:116769400-116780200	Weak transcription	Thymus	Thymus
40	chr9:116769400-116790400	Weak transcription	Right Ventricle	heart
41	chr9:116770400-116779800	Weak transcription	iPS-18 Cell Line	embryonic stem cell
42	chr9:116771000-116779000	Weak transcription	Skeletal Muscle Male	skeletal muscle
43	chr9:116771200-116779200	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
44	chr9:116771400-116779200	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
45	chr9:116771600-116778400	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
46	chr9:116771800-116779000	Weak transcription	Gastric	stomach
47	chr9:116772000-116779000	Weak transcription	Spleen	Spleen
48	chr9:116772400-116779000	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
49	chr9:116772800-116775000	Strong transcription	Ovary	ovary
50	chr9:116773000-116775000	ZNF genes & repeats	H9 Derived Neuron Cultured Cells	ES cell derived

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