Variant report

Variant	rs549569793
Chromosome Location	chr12:56269081-56269082
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Variant related genes	Relation type
ENSG00000135392	Chromatin interaction
ENSG00000123353	Chromatin interaction
ENSG00000205323	Chromatin interaction
ENSG00000182796	Chromatin interaction

Extended variants
information (count: 3 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv719	chr12:56246405-56290812	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
2	nsv1051961	chr12:56262220-56629427	Weak transcription Enhancers Strong transcription Flanking Bivalent TSS/Enh Flanking Active TSS Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	284 gene(s)	inside rSNPs	diseases
3	esv3347258	chr12:56267734-56298106	Weak transcription Enhancers Strong transcription Genic enhancers Flanking Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:14 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr12:56268000-56270200	Enhancers	iPS-18 Cell Line	embryonic stem cell
2	chr12:56268000-56270200	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
3	chr12:56268200-56269200	Weak transcription	HUES48 Cell Line	embryonic stem cell
4	chr12:56268200-56269200	Weak transcription	HUES64 Cell Line	embryonic stem cell
5	chr12:56268200-56269800	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
6	chr12:56268200-56270200	Enhancers	Breast Myoepithelial Primary Cells	Breast
7	chr12:56268400-56269600	Weak transcription	Cortex derived primary cultured neurospheres	brain
8	chr12:56268400-56272200	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
9	chr12:56268600-56269800	Weak transcription	iPS-20b Cell Line	embryonic stem cell
10	chr12:56268600-56271000	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
11	chr12:56268800-56269200	Weak transcription	ES-I3 Cell Line	embryonic stem cell
12	chr12:56269000-56269800	Enhancers	Fetal Thymus	thymus
13	chr12:56269000-56270000	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
14	chr12:56269000-56270000	Enhancers	iPS-15b Cell Line	embryonic stem cell

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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