Variant report

Variant rs549584611
Chromosome Location chr9:117266720-117266721
allele C/G
Outlinks Ensembl   UCSC
Chromatin state (count:118 , 50 per page) page: 1 2 3
No. Chromosome Location Chromatin state Cell line Tissue
1 chr9:117259800-117267200 Weak transcription Primary T helper memory cells from peripheral blood 2 blood
2 chr9:117263600-117267000 Flanking Active TSS H9 Derived Neuron Cultured Cells ES cell derived
3 chr9:117263600-117268400 Active TSS Brain Inferior Temporal Lobe brain
4 chr9:117263800-117266800 Flanking Active TSS Cortex derived primary cultured neurospheres brain
5 chr9:117263800-117267000 Flanking Active TSS Ganglion Eminence derived primary cultured neurospheres brain
6 chr9:117264000-117266800 Enhancers Breast variant Human Mammary Epithelial Cells (vHMEC) Breast
7 chr9:117264200-117268200 Active TSS Brain Dorsolateral Prefrontal Cortex brain
8 chr9:117264200-117268400 Active TSS Brain Angular Gyrus brain
9 chr9:117264400-117266800 Flanking Active TSS K562 blood
10 chr9:117264600-117268200 Active TSS Brain Cingulate Gyrus brain
11 chr9:117264600-117268400 Active TSS Brain Substantia Nigra brain
12 chr9:117264600-117268600 Active TSS Pancreatic Islets Pancreatic Islet
13 chr9:117265000-117266800 Flanking Active TSS Thymus Thymus
14 chr9:117265000-117267000 Flanking Active TSS Duodenum Mucosa Duodenum
15 chr9:117265200-117267000 Weak transcription Small Intestine intestine
16 chr9:117265200-117267000 Flanking Active TSS HepG2 liver
17 chr9:117265200-117267600 Flanking Bivalent TSS/Enh Fetal Thymus thymus
18 chr9:117265400-117266800 Flanking Active TSS Breast Myoepithelial Primary Cells Breast
19 chr9:117265400-117266800 Enhancers Primary B cells from peripheral blood blood
20 chr9:117265400-117267000 Flanking Active TSS Foreskin Melanocyte Primary Cells skin03 Skin
21 chr9:117265400-117268600 Bivalent/Poised TSS Fetal Brain Female brain
22 chr9:117265600-117267000 Enhancers Primary T helper naive cells from peripheral blood blood
23 chr9:117265800-117266800 Flanking Active TSS Primary T regulatory cells fromperipheralblood blood
24 chr9:117265800-117267200 Bivalent/Poised TSS Fetal Adrenal Gland Adrenal Gland
25 chr9:117265800-117267600 Flanking Active TSS HMEC breast
26 chr9:117265800-117268200 Active TSS Duodenum Smooth Muscle Duodenum
27 chr9:117266000-117267000 Flanking Active TSS Foreskin Keratinocyte Primary Cells skin03 Skin
28 chr9:117266000-117267600 Flanking Active TSS Adipose Nuclei Adipose
29 chr9:117266000-117268000 Active TSS Primary T helper cells PMA-I stimulated --
30 chr9:117266000-117268000 Active TSS Rectal Mucosa Donor 29 rectum
31 chr9:117266000-117268600 Bivalent/Poised TSS ES-I3 Cell Line embryonic stem cell
32 chr9:117266200-117267000 Flanking Active TSS Fetal Lung lung
33 chr9:117266200-117267200 Enhancers Primary T helper memory cells from peripheral blood 1 blood
34 chr9:117266200-117267200 Weak transcription Primary T killer memory cells from peripheral blood blood
35 chr9:117266200-117267400 Flanking Active TSS Stomach Smooth Muscle stomach
36 chr9:117266200-117267600 Flanking Bivalent TSS/Enh Primary hematopoietic stem cells G-CSF-mobilized Male --
37 chr9:117266200-117268200 Active TSS Primary T cells effector/memory enriched fromperipheralblood blood
38 chr9:117266200-117268200 Active TSS Rectal Smooth Muscle rectum
39 chr9:117266200-117268400 Active TSS hESC Derived CD56+ Mesoderm Cultured Cells ES cell derived
40 chr9:117266200-117268600 Bivalent/Poised TSS iPS-20b Cell Line embryonic stem cell
41 chr9:117266400-117266800 Flanking Active TSS H1 Derived Neuronal Progenitor Cultured Cells ES cell derived
42 chr9:117266400-117266800 Flanking Bivalent TSS/Enh HUES48 Cell Line embryonic stem cell
43 chr9:117266400-117266800 Flanking Active TSS Primary T killer naive cells fromperipheralblood blood
44 chr9:117266400-117266800 Bivalent Enhancer Muscle Satellite Cultured Cells --
45 chr9:117266400-117266800 Flanking Active TSS Brain Hippocampus Middle brain
46 chr9:117266400-117266800 Bivalent Enhancer Fetal Brain Male brain
47 chr9:117266400-117266800 Flanking Bivalent TSS/Enh Fetal Muscle Leg muscle
48 chr9:117266400-117266800 Enhancers Sigmoid Colon Sigmoid Colon
49 chr9:117266400-117266800 Bivalent Enhancer Skeletal Muscle Female skeletal muscle
50 chr9:117266400-117266800 Bivalent Enhancer Stomach Mucosa stomach

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