Variant report

Variant	rs549619107
Chromosome Location	chr14:25045312-25045313
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 3 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1041336	chr14:24726564-25527319	Weak transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS Enhancers Active TSS Strong transcription Flanking Active TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	107 gene(s)	inside rSNPs	diseases
2	nsv542000	chr14:24726564-25527319	Genic enhancers Enhancers Flanking Bivalent TSS/Enh Weak transcription Active TSS Strong transcription Transcr. at gene 5' and 3' Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	107 gene(s)	inside rSNPs	diseases
3	nsv510631	chr14:25045183-25172311	Weak transcription Flanking Bivalent TSS/Enh Flanking Active TSS Active TSS Enhancers ZNF genes & repeats Bivalent Enhancer Strong transcription Bivalent/Poised TSS Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:11 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:25043200-25047200	Enhancers	Primary monocytes fromperipheralblood	blood
2	chr14:25043200-25047200	Enhancers	Primary neutrophils fromperipheralblood	blood
3	chr14:25043600-25045600	Enhancers	Monocytes-CD14+_RO01746	blood
4	chr14:25044000-25047400	Enhancers	Primary hematopoietic stem cells short term culture	blood
5	chr14:25044200-25045400	Weak transcription	Skeletal Muscle Male	skeletal muscle
6	chr14:25044600-25045400	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
7	chr14:25044600-25045600	Weak transcription	Fetal Thymus	thymus
8	chr14:25044600-25046200	Enhancers	Primary hematopoietic stem cells	blood
9	chr14:25044800-25046400	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
10	chr14:25044800-25051800	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
11	chr14:25045200-25046000	Enhancers	Dnd41	blood

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

what's new

Quick links